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I don't think you can have a negative expression value for gene expression:
![cellbrowserNegativeNumbers](https://user-images.githubusercontent.com/11509990/54782204-89015e00-4bdb-11e9-872c-d5e7764b5…
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Full error:
```
INFO:root:Meta data field index 1: 'Expressed Genes'
Traceback (most recent call last):
File "/cluster/home/mspeir/miniconda3/bin/cbBuild", line 10, in
sys.exit(cbBuildCli(…
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Under "basic usage" / "Example Minimal Cell Browser", the first example data mentioned doesn't download (https://cells.ucsc.edu/downloads/samples/mini.tgz).
I instead downloaded files from the brow…
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Trying to convert a scanpy object and got an issue with the Raw object in my data
```
$ cbImportScanpy -i adata_calc_kendalltau.h5ad -o testThings
INFO:root:Creating testThings
INFO:root:Using a…
Xparx updated
5 years ago
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Hi,
In case of https://cellbrowser.readthedocs.io/tabsep.html - What does the expression matrix look like for snATACseq assays? Would binary accessibility matrix work?
Thanks!
Parul
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Hi,
Can we view the umap clusters in the cellbrowser if we use the newly integrated [SCTransform](https://rawgit.com/ChristophH/sctransform/master/inst/doc/seurat.html) in seurat, the same way we do …
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Running cbBuild on a config file generated through some of the available R code here generates the following error:
```
INFO:root:Found 1 datasets
Traceback (most recent call last):
File "/Use…
pcm32 updated
5 years ago
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After updating my cellbrowser version and then attempting to update some cell browsers I had built using an older version (I think 0.4.53), I now see the following errors when trying to do anything wi…
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When I run cbMarkerAnnotate with no arguments, I get the following 404 error:
```
$ cbMarkerAnnotate markers.tsv markers.annotated.tsv
Traceback (most recent call last):
File "/cluster/home/msp…
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The scanpyToCellbrowser function assumes marker list is given by key 'rank_genes_groups' in data.uns. However scanpy's function 'rank_genes_groups' may add any chosen key by argument 'key_added' (as …