maximilianh cellBrowser issues

maximilianh / cellBrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

https://github.com/ucscGenomeBrowser/cellBrowser/

GNU General Public License v3.0

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issues

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Error in `[.data.frame`(feature.names, , gene.column) : undefined columns selected

#266 mscheperr opened 3 months ago
1
Issue w/ running cbSeurat: argument "counts" is missing, with no default

#265 bugacov opened 7 months ago
17
`scanpy` docs bug still not resolved

#264 alam-shahul closed 9 months ago
5
On killing cbScanpyImport due to Out of memory, process exits with 0 exit code

#263 pcm32 opened 1 year ago
1
--useMtx is ignored if too.big == TRUE in runSeurat.R

#262 RoganGrant opened 1 year ago
6
sync

#261 maximilianh closed 1 year ago
0
[Feature Request] Find Cells by named selection

#260 alexlenail closed 1 year ago
6
Spatial data in cell browser

#259 cancerGen opened 1 year ago
9
Cannot read single sample name from the matrix

#258 kevin198930 opened 1 year ago
3
Cannot find dataset when refreshing

#257 samfenske opened 1 year ago
7
Custom colors for each attribute

#256 cancerGen closed 1 year ago
8
cache problem of google chrome browser or server httpd setting?

#255 yesonse opened 1 year ago
3
abstract.html do not working

#254 yesonse opened 1 year ago
8
Split view by dataset

#253 michael-kotliar opened 1 year ago
1
Master

#252 maximilianh closed 1 year ago
0
Question/Issue: Index not showing

#251 Bhersbach opened 1 year ago
28
os.getLogin() function breaks seurat.py

#250 RoganGrant opened 1 year ago
2
Special characters in the column names

#249 AmelZulji closed 1 year ago
1
stop() instead of error() in the cellbrowser.R script?

#248 tomsing1 closed 2 years ago
1
gene expression and proteins together

#247 mxposed opened 2 years ago
4
Question - Linking cellBrowser through another web-app with dynamic data selection

#246 tkakar closed 1 year ago
9
back merge to original repo

#245 maximilianh closed 2 years ago
0
Changes to cbBuild and adding ExportToCellBrowser.R file

#244 devashishmohanta closed 2 years ago
3
mtx nomenclature in conf file

#243 PriyankaOyx closed 2 years ago
2
alert:Could not load mouse_temp_atac/exprMatrix.bin?chr1|3115016|3115356, error undefined

#242 ckfromCN closed 2 years ago
6
Adding multiple count matrix files in the label counts in the config file for the cbBuild

#241 devashishmohanta opened 2 years ago
3
merge back from new repo.

#240 maximilianh closed 2 years ago
0
python >= 3.9 compatibility (tostring -> tobytes)

#239 kriemo closed 2 years ago
14
Error in in CreateSeuratObject when running cbSeurat on an expression matrix

#238 bugacov closed 2 years ago
5
group related datasets into a hierarchy ending with errors of copying exprMatrix.tsv.gz to itself

#237 yesonse closed 2 years ago
16
Changing dotsize (radius) of cells in an already built cellbrowser

#236 redst4r opened 2 years ago
5
Lasso tool or option to rotate UMAP

#235 shaln opened 2 years ago
3
`view > unsplit` screen with RHS panel selected loses balanced layout

#234 malcook opened 2 years ago
0
ImportError: cannot import name 'cbImportSeurat2Cli' occurs calling cbImportSeurat from command-line on conda install

#233 malcook closed 1 year ago
19
[scATAC-seq]ERROR:root:Cannot download hg38.gencode-34.json

#232 ckfromCN closed 2 years ago
10
Sparse matrices for cbImportScanpy

#231 redst4r closed 2 years ago
11
Exporting the gene expression matrix as sparse matrix (cbImportScanpy, cbBuild)?

#230 redst4r closed 2 years ago
4
Running CBBuild on Autism Data

#229 itskhurrams closed 2 years ago
7
public instance - allen mouse whole cortex - mismatch between cell expression profiles and their metadata

#228 dvera closed 2 years ago
14
semicolons in cell names not properly handled

#227 dvera closed 2 years ago
4
How to re-host the website directly without building it once more?

#226 lijxug closed 2 years ago
38
quickGenesfile config

#225 biocaitao closed 1 year ago
4
Fixed a typo

#224 gusevfe closed 2 years ago
1
Fix drawing labels with vertical layout, fixes #222

#223 mxposed closed 2 years ago
0
Cluster labels are not shown when browser has more height than width

#222 mxposed closed 2 years ago
1
Drawing labels in js

#221 mxposed closed 2 years ago
17
Do not remove focus after showing markers table, fixes #176

#220 mxposed closed 3 years ago
1
getDatasetNameFromUrl() in cellBrowser.js converts most datasetName to lowercase

#219 bugacov closed 2 years ago
6
`Edit|Export Selected` not working

#218 lzx325 closed 3 years ago
5
Use gene_symbol including logic for scanpy import with or without pandas routes.

#217 pcm32 closed 3 years ago
11