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maximilianh
/
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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AnnData conversion no longer grabs var['gene_symbols'] to get gene symbols
#216
pcm32
closed
1 year ago
12
Support multiple clustering resolutions from AnnData
#215
pcm32
opened
3 years ago
4
Longer/adaptable length drop down needed for layouts
#214
pcm32
closed
3 years ago
9
Another silent error (failure with no error code)
#213
pcm32
closed
3 years ago
1
Makes sure cbBuildCli exits with an error code if failed
#212
pcm32
closed
3 years ago
2
documentation for scATAC-seq data
#211
hejing3283
closed
2 years ago
6
cbImportSeurat does not work with Seurat4.0.0 objects?
#210
cotedivoir
closed
3 years ago
15
Sanitises initial underscores in field names
#209
pcm32
closed
3 years ago
11
Scanpy import fails due to fields starting with underscore
#208
pcm32
closed
3 years ago
2
Could not find a dataset when opening index.html file
#207
frankligy
closed
3 years ago
7
Merged master into develop
#206
mxposed
closed
3 years ago
1
Show pct of category in meta histogram
#205
mxposed
closed
3 years ago
7
Draw violin plot asynchronously, speeds up expression display
#204
mxposed
closed
3 years ago
4
A bunch of small fixes and improvements
#203
mxposed
closed
3 years ago
3
Improve binning of expression values for SCTransform
#202
mxposed
closed
3 years ago
7
Remove pycache object
#201
mxposed
closed
3 years ago
0
Show meta values with UTF-8 characters
#200
mxposed
closed
3 years ago
0
UTF8 in metadata fields doesn't work
#199
mxposed
closed
3 years ago
2
expression coloring slow ... hosting advice?
#198
Gibbsdavidl
closed
3 years ago
3
cannot convert float infinity to integer
#197
Parul-Kudtarkar
closed
3 years ago
4
Metadata in the panel on the left does not update on cell hover
#196
mxposed
closed
3 years ago
1
assert(len(newName)!=0) when there is only one cluster in dataset.
#195
luyang93
closed
3 years ago
15
Fix updating metadata
#194
mxposed
closed
3 years ago
0
Given a very large AnnData object, what would be the minimal AnnData fields that are required by CellBrowser?
#193
pcm32
closed
1 year ago
8
Blank page when use example data
#192
tiramisutes
closed
3 years ago
18
select cells based on intersection of annotations
#191
Gibbsdavidl
closed
3 years ago
9
no js files after cbBuild on develop
#190
Gibbsdavidl
closed
2 years ago
2
feature request: split view based on annotation
#189
kriemo
opened
3 years ago
7
URL not working?
#188
ltosti
closed
2 years ago
14
change labeling in layout
#187
LisaSikkema
closed
2 years ago
10
add environment variable option (CBDATAROOT) to define dataRoot
#186
kriemo
closed
3 years ago
2
define dataRoot via command-line argument or environmental variable?
#185
kriemo
closed
3 years ago
3
When reading mtx, produce float32 values, consistent with .tsv.gz.
#184
mxposed
closed
4 years ago
4
Exporting mtx format, strange gene values
#183
mxposed
closed
4 years ago
2
Fix tooltip update on select changes
#181
mxposed
closed
4 years ago
0
Background cells for violin plot, #172
#180
mxposed
closed
4 years ago
2
UMAP and tSNE not picked up on AnnData with multiple embeddings
#179
pcm32
closed
3 years ago
6
Improve selection
#178
mxposed
closed
4 years ago
6
Concatenation of int with str throws error for gene symbols and ids
#177
pcm32
closed
3 years ago
1
Marker gene box is not closable by Esc
#176
mxposed
closed
3 years ago
5
Fix open dataset for plain datasets, fix Esc closing for open dataset…
#175
mxposed
closed
4 years ago
0
cbBuild on sample data throws TypeError: argument of type 'NoneType' is not iterable
#174
modash
closed
3 years ago
3
color buckets distribution after sctransform normalization
#173
cotedivoir
closed
2 years ago
15
is it possible to compare gene expression of one selected group vs another?
#172
inodb
closed
3 years ago
6
Fix #170
#171
inodb
closed
4 years ago
0
Following a standard scanpy pipeline errors on cbBuild (resolveOutDir)
#170
inodb
closed
4 years ago
1
Following a standard scanpy pipeline example gives index error
#169
inodb
closed
2 years ago
4
Allow commas in cluster names in markers file
#168
mxposed
closed
4 years ago
4
blank cluster canvas
#167
Parul-Kudtarkar
closed
4 years ago
2
Single datasets direct entry into viewer (skip selection) for usage in Galaxy
#166
pcm32
closed
3 years ago
5
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