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maximilianh
/
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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Load examples for scanpy are incorrect and misleading
#267
GeoffSCollins
opened
1 month ago
0
Error in `[.data.frame`(feature.names, , gene.column) : undefined columns selected
#266
mscheperr
opened
5 months ago
1
Issue w/ running cbSeurat: argument "counts" is missing, with no default
#265
bugacov
opened
9 months ago
17
`scanpy` docs bug still not resolved
#264
alam-shahul
closed
11 months ago
5
On killing cbScanpyImport due to Out of memory, process exits with 0 exit code
#263
pcm32
opened
1 year ago
1
--useMtx is ignored if too.big == TRUE in runSeurat.R
#262
RoganGrant
opened
1 year ago
6
sync
#261
maximilianh
closed
1 year ago
0
[Feature Request] Find Cells by named selection
#260
alexlenail
closed
1 year ago
6
Spatial data in cell browser
#259
cancerGen
opened
1 year ago
9
Cannot read single sample name from the matrix
#258
kevin198930
opened
1 year ago
3
Cannot find dataset when refreshing
#257
samfenske
opened
1 year ago
7
Custom colors for each attribute
#256
cancerGen
closed
1 year ago
8
cache problem of google chrome browser or server httpd setting?
#255
yesonse
opened
1 year ago
3
abstract.html do not working
#254
yesonse
opened
1 year ago
8
Split view by dataset
#253
michael-kotliar
opened
1 year ago
1
Master
#252
maximilianh
closed
1 year ago
0
Question/Issue: Index not showing
#251
Bhersbach
opened
1 year ago
28
os.getLogin() function breaks seurat.py
#250
RoganGrant
opened
2 years ago
2
Special characters in the column names
#249
AmelZulji
closed
2 years ago
1
stop() instead of error() in the cellbrowser.R script?
#248
tomsing1
closed
2 years ago
1
gene expression and proteins together
#247
mxposed
opened
2 years ago
4
Question - Linking cellBrowser through another web-app with dynamic data selection
#246
tkakar
closed
1 year ago
9
back merge to original repo
#245
maximilianh
closed
2 years ago
0
Changes to cbBuild and adding ExportToCellBrowser.R file
#244
devashishmohanta
closed
2 years ago
3
mtx nomenclature in conf file
#243
PriyankaOyx
closed
2 years ago
2
alert:Could not load mouse_temp_atac/exprMatrix.bin?chr1|3115016|3115356, error undefined
#242
ckfromCN
closed
2 years ago
6
Adding multiple count matrix files in the label counts in the config file for the cbBuild
#241
devashishmohanta
opened
2 years ago
3
merge back from new repo.
#240
maximilianh
closed
2 years ago
0
python >= 3.9 compatibility (tostring -> tobytes)
#239
kriemo
closed
2 years ago
14
Error in in CreateSeuratObject when running cbSeurat on an expression matrix
#238
bugacov
closed
2 years ago
5
group related datasets into a hierarchy ending with errors of copying exprMatrix.tsv.gz to itself
#237
yesonse
closed
2 years ago
16
Changing dotsize (radius) of cells in an already built cellbrowser
#236
redst4r
opened
2 years ago
5
Lasso tool or option to rotate UMAP
#235
shaln
opened
2 years ago
3
`view > unsplit` screen with RHS panel selected loses balanced layout
#234
malcook
opened
2 years ago
0
ImportError: cannot import name 'cbImportSeurat2Cli' occurs calling cbImportSeurat from command-line on conda install
#233
malcook
closed
2 years ago
19
[scATAC-seq]ERROR:root:Cannot download hg38.gencode-34.json
#232
ckfromCN
closed
2 years ago
10
Sparse matrices for cbImportScanpy
#231
redst4r
closed
2 years ago
11
Exporting the gene expression matrix as sparse matrix (cbImportScanpy, cbBuild)?
#230
redst4r
closed
2 years ago
4
Running CBBuild on Autism Data
#229
itskhurrams
closed
2 years ago
7
public instance - allen mouse whole cortex - mismatch between cell expression profiles and their metadata
#228
dvera
closed
2 years ago
14
semicolons in cell names not properly handled
#227
dvera
closed
2 years ago
4
How to re-host the website directly without building it once more?
#226
lijxug
closed
2 years ago
38
quickGenesfile config
#225
biocaitao
closed
2 years ago
4
Fixed a typo
#224
gusevfe
closed
3 years ago
1
Fix drawing labels with vertical layout, fixes #222
#223
mxposed
closed
3 years ago
0
Cluster labels are not shown when browser has more height than width
#222
mxposed
closed
3 years ago
1
Drawing labels in js
#221
mxposed
closed
2 years ago
17
Do not remove focus after showing markers table, fixes #176
#220
mxposed
closed
3 years ago
1
getDatasetNameFromUrl() in cellBrowser.js converts most datasetName to lowercase
#219
bugacov
closed
3 years ago
6
`Edit|Export Selected` not working
#218
lzx325
closed
3 years ago
5
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