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maximilianh
/
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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Single datasets direct entry into viewer (skip selection) for usage in Galaxy
#166
pcm32
closed
3 years ago
5
Font-size for cluster title
#165
Parul-Kudtarkar
closed
2 years ago
6
sparse matrix format
#164
Parul-Kudtarkar
closed
4 years ago
8
Categorical data's name column isn't sortable
#163
detrout
closed
2 years ago
2
display expression values in 2d bins
#162
slowkow
opened
4 years ago
6
desc.conf is not used ?
#161
drbecavin
closed
2 years ago
5
feature request: heatmap to show marker genes for selected cluster
#160
Gibbsdavidl
opened
4 years ago
0
Sharing or local hosting
#159
saeedfc
closed
2 years ago
10
Color error in the browser
#158
karthigayini
closed
3 years ago
22
Resize the side panels.
#157
Gibbsdavidl
opened
4 years ago
13
help with cell annotations
#156
Gibbsdavidl
closed
4 years ago
3
Incorrect external URL for HCA Human Pancreas
#155
moqri
closed
4 years ago
3
Password for each data set
#154
dskyeong
opened
4 years ago
8
cbUpgrade errors (0.5.49 -> current develop branch)
#153
ljpearlman
closed
2 years ago
4
Example data not working with v0.7.3?
#152
kathrinjansen
closed
4 years ago
12
cbBuild --init exit with status 1?
#151
kathrinjansen
closed
4 years ago
5
Feature request: option to change or suppress the "direct link for manuscripts" in the abstract
#150
ljpearlman
closed
4 years ago
2
Feature request: add an option to suppress the "Open" button
#149
ljpearlman
closed
4 years ago
3
Firefox-specific errors
#148
ljpearlman
closed
4 years ago
9
tmpFname not defined
#147
Jeltje
closed
4 years ago
5
New collection format leaves message hidden behind dataset list
#146
matthewspeir
closed
4 years ago
6
Change label font
#145
mxposed
closed
3 years ago
9
Fix css
#144
mxposed
closed
4 years ago
1
Remove bold from legend
#143
mxposed
closed
4 years ago
3
Readthedocs typo
#142
cemalley
closed
4 years ago
7
minimal.conf example not working
#141
prete
closed
4 years ago
8
Color by gene expression not working on dev
#140
matthewspeir
closed
4 years ago
2
Autism dataset infomation is off
#139
randel
closed
4 years ago
7
Fix hide/show labels shortcut key hist disappearing
#138
mxposed
closed
4 years ago
1
Restructure help docs
#137
matthewspeir
closed
4 years ago
0
Create a Cell Browser tutorial
#136
matthewspeir
closed
2 years ago
7
Custom annotations improvements
#135
matthewspeir
opened
4 years ago
4
After parsing metadata columns, column "None" is expected which exits browser build
#134
henrygong
closed
4 years ago
4
cbScanpy -n name not valid when it follows requiremets in error message
#133
matthewspeir
closed
4 years ago
3
Test for types using isinstance
#132
flying-sheep
closed
4 years ago
1
Color legend doesn't behave well with negative numbers
#131
matthewspeir
closed
2 years ago
4
cbBuild doesn't like double quotes around cell names
#130
matthewspeir
closed
4 years ago
4
Issue importing seurat3 file
#129
matthewspeir
closed
2 years ago
16
Error when trying to recalculate markers
#128
matthewspeir
closed
5 years ago
16
matrixType setting in cellbrowser.conf doesn't work
#127
matthewspeir
closed
5 years ago
8
[0.5.45] Could not find a dataset
#126
baracus37
closed
5 years ago
13
Error on importing h5ad file with cbImportScanpy
#125
matthewspeir
closed
5 years ago
1
[0.5.42] cbImportScanpy fails with unrecognised htmlDir issue
#124
pcm32
closed
5 years ago
2
[0.5.38] Missing tiny-queue.js file on conda installation make `cbImportScanpy` fail
#123
pcm32
closed
5 years ago
6
Documentation has incorrect data URLs
#122
ghalasz
closed
5 years ago
7
Bioconda, biocontainers and Galaxy availability
#121
pcm32
closed
5 years ago
3
Fix access to obsm keys
#120
ivirshup
closed
4 years ago
8
ExportToCellbrowser() fails to build when tsne coords are not present
#119
apblair
closed
2 years ago
5
Case for gene_symbols in var from anndata
#118
pcm32
closed
5 years ago
12
0.5.37 cbImportScanpy fails at gzipped file open operation
#117
pcm32
closed
5 years ago
3
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