issues
search
maximilianh
/
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
104
stars
40
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
error when running cbScanpy
#116
matthewspeir
closed
5 years ago
4
Easy to unintentionally overwrite meta file with cbTool metaCat
#115
matthewspeir
closed
5 years ago
3
find by ID - search feature
#114
hbeale
closed
5 years ago
3
Clicking on something in the legend results in an error
#113
matthewspeir
closed
5 years ago
4
On small screen (<1000px) issues with back to list text
#112
matthewspeir
closed
2 years ago
1
Group select in legend
#111
matthewspeir
closed
2 years ago
6
For marker genes, p-values in scientific notation not correctly sorted
#110
matthewspeir
opened
5 years ago
5
summary.html not found although datasetDesc.conf was used
#109
matthewspeir
closed
5 years ago
6
Issues with recent genes and changing datasets
#108
matthewspeir
closed
5 years ago
5
gencode-mouse.symbols.tsv.gz HTTP 404
#107
matthewspeir
closed
5 years ago
2
cbImportSeurat2 not working on an rds file?
#106
matthewspeir
closed
5 years ago
4
no such file or directory summary.conf
#105
nasqar
closed
5 years ago
9
If colors.tsv defined, anything not in colors.tsv defaulted to gray
#104
matthewspeir
closed
5 years ago
4
cbBuild not correctly recognizing number types in matrix
#103
matthewspeir
closed
5 years ago
12
After selecting dataset, cell count becomes hard to read (grey on dark blue background)
#102
matthewspeir
closed
4 years ago
1
In splitscreen mode, remove split after new dataset loaded
#101
matthewspeir
closed
4 years ago
1
List of cell annotations not scrollable anymore
#100
matthewspeir
closed
5 years ago
1
Weird effects after combining heatmap and splitscreen at the same time
#99
matthewspeir
closed
5 years ago
2
Histogram details shows 'undefined' for numerical metadata fields
#98
matthewspeir
closed
5 years ago
1
Can't get description for a quick gene to display
#97
matthewspeir
closed
5 years ago
11
Error: internal error: alpha is not defined
#96
matthewspeir
closed
5 years ago
7
Not all metadata fields show up in search
#95
matthewspeir
closed
5 years ago
3
Cellbrowser does not respect scanpy's naming flexibility if rank_genes_groups in scanpyToCellbrowser function
#94
flatberg
closed
5 years ago
3
scanpyToTsv
#93
Leprechaun777
closed
5 years ago
6
seurat and sctransform
#92
nasqar
closed
5 years ago
13
'Expressed Genes' meatdata shows negative numbers?
#91
matthewspeir
closed
5 years ago
8
Long gene names in 'Recent Genes' makes table too wide
#90
matthewspeir
closed
2 years ago
1
Define multiple cluster fields
#89
matthewspeir
closed
2 years ago
14
adding collections, planning
#88
maximilianh
closed
4 years ago
2
updated files aren't always replaced by cbBuild
#87
matthewspeir
closed
5 years ago
10
cbBuild error on numerical metadata field
#86
matthewspeir
closed
5 years ago
15
AttributeError: 'Raw' object has no attribute 'transpose'
#85
Xparx
closed
5 years ago
6
Documentation improvements
#84
matthewspeir
closed
4 years ago
9
"['UMI_Count'] not in index" error in cbScanpy
#83
matthewspeir
closed
5 years ago
2
Rectangle select not working
#82
matthewspeir
closed
5 years ago
7
Can't search by gene symbol in my cell browser
#81
matthewspeir
closed
5 years ago
2
Using additional fields from annData objects
#80
pinin4fjords
closed
5 years ago
7
cbBuild error, can't recognize Louvain_Cluster vs Louvain Cluster
#79
matthewspeir
closed
5 years ago
7
Capture metadata in Loom files
#78
matthewspeir
closed
5 years ago
13
cbMarkerAnnotate crashes on getting COSMIC file
#77
matthewspeir
closed
5 years ago
2
snATAC seq expression matrix
#76
Parul-Kudtarkar
closed
5 years ago
16
cbScanpy, no indication that name (-n) can't be quoted to include spaces
#75
matthewspeir
closed
5 years ago
1
cbMarkerAnnotate error when running in miniconda3
#74
matthewspeir
closed
5 years ago
1
Bugs in v4.38
#73
Jeltje
closed
5 years ago
5
0.4.36 cbBuild fails due to egg file accessed through open method
#72
pcm32
closed
5 years ago
11
Weird artifact in gene name text box
#71
matthewspeir
closed
5 years ago
2
For computed cluster markers, no link outs to gene resources
#70
matthewspeir
opened
5 years ago
9
Allow a change to the cluster field
#69
maximilianh
closed
2 years ago
4
Graft R directory for seurat import code.
#68
pcm32
closed
5 years ago
2
0.4.35 fails to run for Seurat on conda install
#67
pcm32
closed
5 years ago
2
Previous
Next