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maximilianh
/
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
https://github.com/ucscGenomeBrowser/cellBrowser/
GNU General Public License v3.0
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cbScanpy failing with error: "ValueError: cannot reindex with a non-unique indexer"
#66
matthewspeir
closed
5 years ago
16
duplicates in list of recent genes
#65
slowkow
closed
4 years ago
5
Conda install fails for 0.4.30 due to missing setup.cfg file
#64
pcm32
closed
5 years ago
4
'Find Cells' doesn't work
#63
matthewspeir
closed
5 years ago
14
Double-click to zoom
#62
maximilianh
closed
4 years ago
1
Static files are cached between the updates
#61
mxposed
closed
5 years ago
1
P-value for marker genes gets rounded to 4 decimal places
#60
mxposed
closed
5 years ago
1
When computing markers, take top-n without dplyr, and with respect of p-value
#59
mxposed
closed
5 years ago
5
Fix "open dataset" button for Firefox
#58
mxposed
closed
5 years ago
1
Compute markers if markers file is not given
#57
mxposed
closed
5 years ago
1
cbScanpy dies on PAGA
#56
Jeltje
closed
5 years ago
9
typo in README?
#55
Jeltje
closed
5 years ago
4
Avoid failing silently
#54
pcm32
closed
5 years ago
1
R fails silently instead of producing an error code
#53
pcm32
closed
5 years ago
5
Add bioconda installation alternative.
#52
pcm32
closed
5 years ago
1
permissions issue when building into webserver directory
#51
daskelly
closed
5 years ago
4
Fix Open dataset dialog after dataset is loaded
#50
mxposed
closed
5 years ago
2
Add cbSeurat to list of executables
#49
pcm32
closed
5 years ago
1
Update geneinfo.py exception handling to python3
#48
pcm32
closed
5 years ago
1
Move open dataset button to datasets list
#47
mxposed
closed
5 years ago
1
Support for reading data from Loom files
#46
pcm32
closed
5 years ago
4
Typo in writeCellBrowser
#45
Jeltje
closed
5 years ago
1
cbScanpy --init doesn't exist
#44
Jeltje
closed
5 years ago
14
pbmc3k example problems
#43
Jeltje
closed
5 years ago
1
scanpy example throws error
#42
Jeltje
closed
5 years ago
7
Update path in README
#41
ivirshup
closed
5 years ago
1
Example build fails on MacOS with python2
#40
ivirshup
closed
5 years ago
6
Scanpy cbBuild Assertion Error
#39
apblair
closed
5 years ago
8
Add function to process markers
#38
mxposed
closed
5 years ago
1
Add converter from Seurat object to cbBuild compatible tsv
#37
mxposed
closed
5 years ago
10
Fix example build on MacOS
#36
mxposed
closed
5 years ago
1
Example build fails on mac
#35
mxposed
closed
5 years ago
0
rsync to hgwdev gets Connection refused
#34
Jeltje
closed
5 years ago
8
datasets to add
#33
maximilianh
closed
2 years ago
3
color by multiple genes
#32
maximilianh
opened
5 years ago
0
No cluster markers in example
#31
Jeltje
closed
5 years ago
2
hide selection
#30
maximilianh
opened
5 years ago
1
find cells
#29
maximilianh
closed
4 years ago
4
link to a specific gene
#28
slowkow
closed
6 years ago
1
displaying subsets of the data
#27
slowkow
closed
5 years ago
9
display gene table and heatmap
#26
slowkow
opened
6 years ago
5
cbBuild 0.25 fails with sample 1 data
#25
pcm32
closed
6 years ago
8
cbBuild v0.2 fails with sample1 dataset
#24
pcm32
closed
6 years ago
2
`cbBuild -i config-file` fails on latest release version 0.2
#23
pcm32
closed
5 years ago
1
Sample Dataset TypeError: 'NoneType'
#22
apblair
closed
6 years ago
8
Update to get --debug level logging to output in my environment
#21
lammig
closed
6 years ago
2
color by age
#20
maximilianh
closed
5 years ago
4
fix Jim's bug: zoom -> color -> zoom out
#19
maximilianh
closed
6 years ago
1
give indication when a field cannot be used for coloring
#18
maximilianh
closed
6 years ago
0
when a cell is selected the left legend isn't doing anything
#17
maximilianh
closed
5 years ago
2
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