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Hello,
I am looking forward to trying out your new pipeline to see if it can be incorporated into my tumor clonality work.
However, I am getting stuck on getting change points to be properly ca…
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`collapseMatrix` is currently written in a way that prevents a user from collapsing non-adjacent stages. Specifically, the `collapse` argument is a character vector whose elements must reflect single …
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I have generated clonality plots using the cnaCCF_plots() function and noticed that the cancer cell fraction histogram tends to show that values lie within the range of [0, 1.5]. This is also true for…
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81a16d5
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Hello,
I'm really excited to use this software, I've been hoping someone produces a GWA method for prokaryotes that accounts for clonality and lineage effects!
I ran into a KeyError when I tried…
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From [PureCN](https://github.com/lima1/PureCN/issues/6)
@leeprichman
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I've noticed a few potential bugs in `makeLifeTable`, some of which also apply to `dEntropy`, and `kEntropy`.
### Applies to `makeLifeTable`, `dEntropy`, and `kEntropy`
1\. I think the loop to c…
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In file https://github.com/gavinha/TitanCNA/blob/master/R/utils.R
in function computeSDbwIndex code:
```r
else if (S_Dbw.method == "Tong"){
###### NOTE #######
## The authors originally u…