FunGeST Palimpsest issues

FunGeST / Palimpsest

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

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issues

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What values should be used for 'nmin' and 'nmaj' in CNA at bettenberge?

#64 wonwon03172 opened 6 months ago
0
compare_results() not working. "`template` must have a `names` attribute."

#63 subashani01 closed 3 months ago
7
SBS_cosmic reference

#62 ZWael opened 1 year ago
0
Problem about deconvolution_fit_SV()?

#61 edceeyuchen opened 1 year ago
0
Difficulty understanding SV input data

#60 anoronh4 opened 2 years ago
0
Error running deconvolution_fit_SV with plotting

#59 anoronh4 opened 2 years ago
5
emergency!!!!!deconvolution_fit() failed from recursive default argument reference

#58 wangpenhok opened 2 years ago
1
Small changes to file paths

#57 benedict909 closed 3 months ago
1
Error in add_DBS_cats_ToVCF

#56 alhafidzhamdan opened 3 years ago
0
Input_file and annotation

#55 FL512 opened 3 years ago
0
Driver Genes about Signatures

#54 chendongo opened 3 years ago
0
How I can make the natural history plot clearer

#53 MaryGoAround opened 3 years ago
2
SBS signatures choice

#52 N-TI opened 4 years ago
0
nrun for denovo SV signatures

#51 AndreVidas opened 4 years ago
0
Permanent error in getting indeed signatures

#50 Mussa1122 closed 4 years ago
0
Visualising the results of mutation origin

#49 beginner984 opened 4 years ago
1
Taking the origin of each signature

#48 MaryGoAround closed 4 years ago
0
Problem in running clonality

#47 beginner984 closed 4 years ago
2
error in DBS & ID denovo signatures extract

#46 shiguangyini opened 4 years ago
1
Error in getting DSB

#45 beginner984 closed 4 years ago
1
Minor fix on paragraph 33

#44 kant closed 3 months ago
0
Providing input file for software

#43 MaryGoAround opened 4 years ago
2
What does this error mean

#42 beginner984 opened 4 years ago
4
Putting bedtools in the path

#41 MaryGoAround closed 4 years ago
1
Calculating ntot for your software

#40 MaryGoAround opened 4 years ago
1
Few number of clonal and sub-clonal variants

#39 beginner984 opened 4 years ago
3
Same mutation in two different signatures

#38 rahulk87 opened 4 years ago
4
Figure 6A&B

#37 rahulk87 closed 4 years ago
2
Signatures Contributing to Driver Genes

#36 mkinnaman opened 4 years ago
2
palimpsest_DissectSigs for null clonal or subclonal

#35 jh2663 opened 4 years ago
0
error using deconvolution_nmf

#34 Sames-Jtudd opened 4 years ago
6
error in returning ID catergories with hg19 version

#33 jh2663 closed 4 years ago
4
error in returning DBS catergories

#32 jh2663 closed 4 years ago
3
Error in "palimpsest_plotTumorHistories"

#31 iS4i4S closed 4 years ago
1
Confusion

#30 shiguangyini closed 4 years ago
3
annotate_VCF error: extract Indel categories for hg38

#29 iS4i4S closed 4 years ago
3
Trouble with function

#28 shiguangyini closed 4 years ago
1
master

#27 FunGeST closed 4 years ago
0
Piechart empty ("explode" is not a graphical parameter)

#26 ahwanpandey closed 4 years ago
2
example data not available when installing using install_github

#25 ahwanpandey closed 4 years ago
2
Can't install package from git!

#24 ahwanpandey closed 4 years ago
1
Insertion for SV signature

#23 xtmgah closed 4 years ago
1
Troubles with BiocInstaller

#22 andhena closed 4 years ago
1
Timing Chromosomal Gains

#21 campbellpratt opened 5 years ago
1
cnaCCF_annot Issue: ntot

#20 campbellpratt closed 5 years ago
9
Using a different signatures file as input

#19 marcjwilliams1 closed 5 years ago
2
Timing Chromosomal Gains

#18 xtmgah closed 5 years ago
1
Purity column in CNV analysis

#17 beginner984 closed 5 years ago
1
length of 'dimnames' [1] not equal to array extent for SV analysis

#16 alvinwt closed 5 years ago
2
bugfix - palimpsest_plotTumorHistories

#15 sbamin closed 5 years ago
1