issues
search
FunGeST
/
Palimpsest
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
68
stars
19
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
What values should be used for 'nmin' and 'nmaj' in CNA at bettenberge?
#64
wonwon03172
opened
6 months ago
0
compare_results() not working. "`template` must have a `names` attribute."
#63
subashani01
closed
3 months ago
7
SBS_cosmic reference
#62
ZWael
opened
1 year ago
0
Problem about deconvolution_fit_SV()?
#61
edceeyuchen
opened
1 year ago
0
Difficulty understanding SV input data
#60
anoronh4
opened
2 years ago
0
Error running deconvolution_fit_SV with plotting
#59
anoronh4
opened
2 years ago
5
emergency!!!!!deconvolution_fit() failed from recursive default argument reference
#58
wangpenhok
opened
2 years ago
1
Small changes to file paths
#57
benedict909
closed
3 months ago
1
Error in add_DBS_cats_ToVCF
#56
alhafidzhamdan
opened
3 years ago
0
Input_file and annotation
#55
FL512
opened
3 years ago
0
Driver Genes about Signatures
#54
chendongo
opened
3 years ago
0
How I can make the natural history plot clearer
#53
MaryGoAround
opened
3 years ago
2
SBS signatures choice
#52
N-TI
opened
4 years ago
0
nrun for denovo SV signatures
#51
AndreVidas
opened
4 years ago
0
Permanent error in getting indeed signatures
#50
Mussa1122
closed
4 years ago
0
Visualising the results of mutation origin
#49
beginner984
opened
4 years ago
1
Taking the origin of each signature
#48
MaryGoAround
closed
4 years ago
0
Problem in running clonality
#47
beginner984
closed
4 years ago
2
error in DBS & ID denovo signatures extract
#46
shiguangyini
opened
4 years ago
1
Error in getting DSB
#45
beginner984
closed
4 years ago
1
Minor fix on paragraph 33
#44
kant
closed
3 months ago
0
Providing input file for software
#43
MaryGoAround
opened
4 years ago
2
What does this error mean
#42
beginner984
opened
4 years ago
4
Putting bedtools in the path
#41
MaryGoAround
closed
4 years ago
1
Calculating ntot for your software
#40
MaryGoAround
opened
4 years ago
1
Few number of clonal and sub-clonal variants
#39
beginner984
opened
4 years ago
3
Same mutation in two different signatures
#38
rahulk87
opened
4 years ago
4
Figure 6A&B
#37
rahulk87
closed
4 years ago
2
Signatures Contributing to Driver Genes
#36
mkinnaman
opened
4 years ago
2
palimpsest_DissectSigs for null clonal or subclonal
#35
jh2663
opened
4 years ago
0
error using deconvolution_nmf
#34
Sames-Jtudd
opened
4 years ago
6
error in returning ID catergories with hg19 version
#33
jh2663
closed
4 years ago
4
error in returning DBS catergories
#32
jh2663
closed
4 years ago
3
Error in "palimpsest_plotTumorHistories"
#31
iS4i4S
closed
4 years ago
1
Confusion
#30
shiguangyini
closed
4 years ago
3
annotate_VCF error: extract Indel categories for hg38
#29
iS4i4S
closed
4 years ago
3
Trouble with function
#28
shiguangyini
closed
4 years ago
1
master
#27
FunGeST
closed
4 years ago
0
Piechart empty ("explode" is not a graphical parameter)
#26
ahwanpandey
closed
4 years ago
2
example data not available when installing using install_github
#25
ahwanpandey
closed
4 years ago
2
Can't install package from git!
#24
ahwanpandey
closed
4 years ago
1
Insertion for SV signature
#23
xtmgah
closed
4 years ago
1
Troubles with BiocInstaller
#22
andhena
closed
4 years ago
1
Timing Chromosomal Gains
#21
campbellpratt
opened
5 years ago
1
cnaCCF_annot Issue: ntot
#20
campbellpratt
closed
5 years ago
9
Using a different signatures file as input
#19
marcjwilliams1
closed
5 years ago
2
Timing Chromosomal Gains
#18
xtmgah
closed
5 years ago
1
Purity column in CNV analysis
#17
beginner984
closed
5 years ago
1
length of 'dimnames' [1] not equal to array extent for SV analysis
#16
alvinwt
closed
5 years ago
2
bugfix - palimpsest_plotTumorHistories
#15
sbamin
closed
5 years ago
1
Next