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I've started compiling a list of all the useful plots I could think of with examples and whether it is available in PandasGUI:
https://docs.google.com/spreadsheets/d/1ORw1GWTent5NJmIf23Co7EPTBBjNy…
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As mentioned once, we have tested this package during a course using a small data set from Fujiwara et al. (2014). Now my question is if there is a possibility to implement the modified Twinspan accor…
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**terminate called after throwing an instance of 'raft::cuda_error'**
Hi, I'm using cuml.HDBSCAN and the following problem was encountered.
`terminate called after throwing an instance of 'raft::c…
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Dear infercnv developers,
Hi.
I have a problem when using "runCnvAnalysis" function of SPATA2.
So, I would appreciate it if you let me know if there is a solution.
spata_bm1
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The overall idea is to allow toggling between the 'cells' view (umap/tsne) with a 'genes' view (heatmap probably) so that cellxgene users can get a sense of the overall shape of the dataset from a gen…
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The script runs as shown in the log file:
2024-10-04 15:38:38
2024-10-04 15:38:38 R version 4.0.5 (2021-03-31) -- "Shake and Throw"
2024-10-04 15:38:38 Copyright (C) 2021 The R Foundation for St…
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### Problem statement
The right-click menu on the workspace has a "Clean up Blocks" option. This currently arranges all of the blocks stacks vertically, with a bit of space between each stack, a…
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Is it possible to view the hierarchical clustering tree that is created when the tile plots are made? It would be useful to see how some of the groups branched.
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# Reviewer 1
- [ ] To start with, I think that intuitions should be put forward more quickly in the manuscript. I was convinced of the validity of the model for connectomes only when I saw figure …
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Hello, I have tried TooManyCells in a single case(four samples from the same case), and the result looks very nice. So now I want to try it for multiple cases.
However, when I ran `make-tree` with th…