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Hello!
Thanks a lot for making this tool available. I ran the demo and analyzed the sample dataset with no issues but when testing charcoal on my own dataset I am running into errors which seem to…
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Hi Dr. Hou,
Thanks for your wonderful work! I am aware that Lamian is designed for multiple scRNA samples, but quite curious about whether it can handle the reduced one-sample case. In some scenari…
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Hi Mara,
I followed your video about PICRUSt2 and it was very helpful in getting my analyses done.
However, I'm still having difficulty in getting downstream statistical analysis and data visualizat…
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Hi!
Thanks a lot for the great tool! We already got some interesting results, but now are running into issues using more complex design and contrast matrices.
I tried following your vignette in …
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Hello,
I have a quick question about tax4fun2. Is it possible to generate a file that has the KO annotations for each individual ASV/OTU in my dataset? Ideally I would like to be able to do thing…
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Hello,
I have been using LinDA on my microbiome dataset and have generated the effect size plots.
In the effect size plots, there is a separation between "debiased" and "un-debiased".
I was wonde…
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Hi, @mcalgaro93, when using the createPositives function, does using `slot = "pValMat", colName = "rawP", type = "pvalue"` (positives1 object in the code below) mean that the features are ranked by ra…
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Hi,
I am using DIA-NN data with default contaminants added. This way DIA-NN uses a fasta file of cRAP proteins, in wich protein accessions, uniprot_id-s and gene names start with "crAP-".
When i use…
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Hi, I have been using your tool and have successfully used it for the differential analysis. All my files are in one directory. I have successfully used the following code to run:
./Diff_APA_site_ana…
SMM02 updated
4 years ago
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Hi,
I am quite new to microbiome analysis and, frankly, quite at a loss as to how to proceed. So, I apologize is my question is naive or has already been answered elsewhere. I have just read a paper …