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ChiLiubio
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microeco
An R package for data analysis in microbial community ecology
GNU General Public License v3.0
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Query Regarding Paired Sample Analysis with `trans_diff` Function
#379
learn-lx-zhu
opened
10 hours ago
1
Error in trans_diff$new by method = "lefse"
#377
cheng-xd
closed
4 days ago
8
Plotting Relative Abundance Graph with 3 Factors
#376
amandamanully
opened
1 week ago
1
Error while importing HUMAnN unstratified table
#375
anw-sh
opened
1 week ago
3
Taxa labels dont show up in plot_diff_cladogram
#374
jackqio
closed
2 weeks ago
2
Adding exting network
#373
DpennaS
opened
2 weeks ago
9
Correlation of an ASV with various environmental variables
#372
guianrey
opened
3 weeks ago
1
ggcor needed for Mantel test + Correlation heatmap is no longer available
#371
eperezv
closed
1 month ago
2
merge function doubt
#369
jamorillo
opened
1 month ago
2
Error when running cal_mantel_corr
#368
afmbafmb
opened
1 month ago
2
Taxa labels dont show up after performing plot_diff_cladogram
#367
BiggusDickus666
closed
1 month ago
8
Error in dataset$tidy_dataset()
#366
Ye-Yonglian
closed
1 month ago
2
Error in private$tidy_samples(self)
#364
fafuwjw
opened
1 month ago
4
What does the se.ACE in the microbial alpha diversity index indicate
#362
makerer5
closed
1 month ago
1
Error in x[[p]] : subscript out of bounds
#361
yumiao222222
opened
1 month ago
3
dbRDA results
#360
DimitraIoli
opened
1 month ago
2
Cal_alphadiv skips observed
#359
Manso002
opened
1 month ago
3
cal_cor() correlation between diversity metrics and env factors?
#358
marwa38
opened
1 month ago
3
problem with downloading abundance table
#357
guianrey
closed
1 month ago
2
assign named colors to 'plot_sum_links'
#356
chrissy005
closed
2 months ago
2
Sample ID in rarefactions curves
#355
jamorillo
closed
1 month ago
2
tidy_taxonomy function do not properly perform tax_table clean up
#354
BiggusDickus666
opened
2 months ago
4
Taxa assigned incorrectly to different groups in trans_func plots
#353
MarwaElnaiem
opened
2 months ago
1
Error in method = cicrlize with plot_sum_links
#352
chrissy005
closed
2 months ago
8
can you add method =" euclidean” of microtable$cal_betadiv?
#351
milyzhou
closed
1 month ago
1
unused argument error
#350
tenguzame
opened
2 months ago
1
Chao1 index is the same with observed.
#349
WangWaud
closed
2 months ago
4
Can't find function trans_ordination
#348
Jgruetzke
closed
1 month ago
3
Does cal_network() use relative abundance to make a network?
#347
WangWaud
closed
2 months ago
1
FAPROTAX update
#346
jackqio
closed
1 month ago
1
R Session Aborted R encountered a fatal error The session was terminated
#345
makerer5
opened
2 months ago
4
How to re order sample ID in a barplot
#344
srisvs33
closed
3 months ago
2
MEGAN output to microeco
#343
spe238
opened
3 months ago
1
Error in reproducing the relative abundance figure
#342
srisvs33
closed
3 months ago
2
taxa nested bug?
#341
jamorillo
closed
2 months ago
12
t1$cal_group_distance_diff with two variables
#340
milyzhou
closed
3 months ago
5
trans_diff$new with two variables
#339
milyzhou
closed
3 months ago
3
Error in rep(1, nrow(edges)) When running plot_diff_cladogram
#338
Harr7y
closed
1 month ago
5
how to select a group as reference per run MaAsLin2 diferential abundance analysis
#337
milyzhou
opened
3 months ago
1
How to extract the contribution of a variable to the principal component (percentage)
#336
milyzhou
opened
3 months ago
1
t1 <- trans_diff$new(dataset = dataset, method = "metagenomeSeq", group = "Group", taxa_level = "Genus") #Error in h(simpleError(msg, call)) : Error in evaluating 'x' argument for selecting a method for the 'unique' function: There is no function called "setkey".
#335
xinguo1236
closed
3 months ago
5
t1 <- trans_diff$new(dataset = dataset, method = "metagenomeSeq", group = "Group", taxa_level = "Genus") #Error in h(simpleError(msg, call)) : Error in evaluating 'x' argument for selecting a method for the 'unique' function: There is no function called "setkey".
#334
xinguo1236
closed
3 months ago
0
d1 <- dataset$merge_taxa(taxa = "Genus") Error in check_tax_level(taxa, self) : 没有"check_tax_level"这个函数
#333
xinguo1236
closed
3 months ago
9
Error in guides_train(scales = scales$non_position_scales(), theme = theme, : could not find function "guides_train"
#331
PPpissar
closed
2 months ago
4
taxa_abund =null
#330
Elixir0822
closed
3 months ago
2
how to creat trans_alpha and trans_beta in genus level
#329
milyzhou
closed
1 month ago
2
cal_process from null model
#328
DpennaS
opened
4 months ago
4
Error in cal_network: Invalid edge ID when retrieving edge endpoints. Invalid value (microeco V 1.4.0)
#327
Microbeventurer
opened
4 months ago
1
NST, betaNTI and RCbray
#326
DpennaS
closed
4 months ago
2
Issue with dimnames(x) <- dn
#325
UsernameUrie
closed
4 months ago
4
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