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ChiLiubio
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microeco
An R package for data analysis in microbial community ecology
GNU General Public License v3.0
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question in barplot and data_taxanames
#324
CQMUyan
closed
4 months ago
2
Identification of ASVs biomarkers and longitudinal microbiome analysis
#323
guianrey
opened
4 months ago
3
'No significant taxa' error message with trans_diff
#322
AmalHmaiss
closed
1 month ago
6
Convert module to microtable object (trans_comm)
#321
anabelvonjackowski
closed
1 month ago
6
relative abundance for dominant functions for 16S using FAPROTAX
#320
biazen123
opened
4 months ago
4
missing value where TRUE/FALSE needed with cal_diff(method = "anova")
#319
MarwaElnaiem
closed
5 months ago
2
Change text type and colors of taxa names in plot_heatmap
#318
Taiyou187
opened
5 months ago
3
trans_env plot_scatterfit #Error in private$check_scatterfit_input(y, "y") : #The input y is neither a vector nor a matrix !
#317
xinguo1236
closed
4 months ago
3
Taxonomic names in LeFSe plot
#316
DpennaS
closed
4 months ago
2
PerMANOVA for trans_alpha$cal_diff()
#315
biazen123
closed
1 month ago
2
Pielou metric for alpha diversity is not working
#314
Ilaria-Pirona
closed
5 months ago
1
trans_env class: Error in vegdist(scale(env[, i, drop = FALSE]), "euclid") : missing values are not allowed with argument 'na.rm = FALSE'
#313
xinguo1236
closed
5 months ago
0
trans_env class: Error in vegdist(scale(env[, i, drop = FALSE]), "euclid") : missing values are not allowed with argument 'na.rm = FALSE'
#312
xinguo1236
closed
5 months ago
2
Error when run t1$cal_diff Error in if (pvalue[k] <= 0.001) sig[k] <- "***" else if (pvalue[k] <= : #Missing values should not be used where TRUE/FALSE values are required
#311
xinguo1236
closed
5 months ago
3
Error when run t1$cal_diff Error in if (pvalue[k] <= 0.001) sig[k] <- "***" else if (pvalue[k] <= : #Missing values should not be used where TRUE/FALSE values are required
#310
xinguo1236
closed
5 months ago
0
significance letter in plot_diff
#309
DpennaS
closed
1 month ago
2
Applicability of Residual randomization in permutation procedures (RRPP) in Microeco
#308
biazen123
opened
5 months ago
1
Mantel + Correlation heatmap
#307
DpennaS
closed
4 months ago
6
Errors in matching the OTU names in the OTU table and the tree
#306
haitilin
closed
5 months ago
2
trans_env class CCA module title error
#305
makerer5
closed
5 months ago
2
plot_bar yields different scale for relative abundance when using high_level
#304
lixiaopi1985
closed
5 months ago
1
Error when run lefse analysis
#303
LAmethyst
closed
3 months ago
4
More than 1 or 2 environmental data in microtable
#301
biazen123
closed
5 months ago
7
Category 'unidentified' when analyzing the relative abundance of species
#300
bfalco
closed
1 month ago
7
NMDS aesthetics
#299
jamorillo
closed
1 month ago
2
cal_mantel_corr()
#297
chrissy005
closed
5 months ago
3
Distance attenuation relationship
#296
makerer5
closed
5 months ago
3
Distance attenuation relationship
#295
makerer5
closed
7 months ago
0
Calculate the mean relative abundance with two variables
#294
bfalco
closed
3 months ago
10
Error: Input colors are not enough to use
#293
bingheer
closed
5 months ago
5
change color
#292
jimena18-O
closed
5 months ago
3
ploting specific taxa
#291
jamorillo
opened
7 months ago
7
why some otu were omiited when doing trans_venn ?
#289
Chuan-Jiang
closed
7 months ago
4
extracting p-values and correlation from cal_spe_func result
#288
galud27
closed
5 months ago
2
choose own colours for plots
#287
JAkorli
closed
8 months ago
1
网络分析中无法成功运行CPU多线程
#286
purplesoil
closed
8 months ago
1
dbRDA flipping vector directions
#285
spencerlong1
closed
5 months ago
2
Taxonomic rank names
#284
alecbiom
closed
8 months ago
2
Merge two otu tables
#283
MiaCoco
closed
8 months ago
4
Convert net_construct or net_analyse object to trans_network or cal_network class
#281
chrissy005
opened
8 months ago
16
The metagenomics code
#280
CYBERBOY1210
closed
8 months ago
1
Can you help me with plot_diff_cladogram?
#279
CTTST
closed
5 months ago
3
lefse plot
#278
jimena18-O
closed
5 months ago
3
problem in getting desired levels of a factor in facet_wrap of rarefaction curve
#277
apoosakkannu
opened
9 months ago
2
phyloseq2meco function of microeco doesnt work for me
#276
marjanghotbi
closed
9 months ago
1
trans_network
#275
Hobgoblin8
closed
1 month ago
3
trans_network: in function module_roles the values of z and p may calculated incorrectly
#274
trx296554555
closed
9 months ago
5
About trans_diff$plot_diff_abund function: reorder taxa according to P.adj
#273
kestlermai
closed
9 months ago
2
Cal_cor: Not all variable in the correlation matrix
#272
RoyDibakar
closed
3 months ago
6
cal_cor. Environmental factors and some important taxa
#271
jimena18-O
closed
5 months ago
6
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