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Hi @ManuelTgn,
Can you kindly let me know which verison of 1000-genome-project SNV_and_Indels is used along with the server: https://crisprme.di.univr.it/?
Is it phase [3](https://www.internation…
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Hi,
first of all, thank you for this tool. It has really saved our ass in a different experiment where HTO-based demultiplexing failed. Thank you a lot.
I am running now vireo on two 10x sequenc…
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**Describe the bug**
Reported diseases or phenotypes from genetic evidence sources are not aligned with the name of disease association page.
**Observed behaviour**
Diseases or phenotypes display…
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Hello,
Thank you for your great work!
I was wondering if the calibration and optimization approaches as well as your LSTM model used in the study are available somewhere. This repo is for the tran…
fremk updated
5 months ago
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Dear @pkalbers,
Can you please advice on the structure of the input data?
Lets say I am interested in the age distribution of haplotypes in divergent loci observed across the genome, for examp…
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Hello,
I'm working with a mixture of low (5-10x) and very low (0.5x) coverage WGS sequences. I've got about 900 of them from a diverse set of populations, and variants are discovered every 10-20bp. I…
nreid updated
4 years ago
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**Transferred from:** [NIF-11599](https://support.crbs.ucsd.edu/browse/NIF-11599)
**Original Reporter:** Nicole Washington
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We need a section of GENO that records the properties of an "allele" on…
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A [recent paper](https://www.nature.com/articles/s41586-023-06924-6) by DeepMind demonstrated the use of FunSearch, an "evolutionary procedure" pairing an LLM with a systematic evaluator, on problems …
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Hello,
Thank you for creating this very useful analysis tool
I am facing issues with this step:
mv /example/giab/*_reverted.vcf.gz /example/giab/phased_files
error: no matches found
Coul…
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Continuing discussion from here:
https://github.com/hyattpd/Prodigal/issues/31
Current proposal:
* User can specify a single genetic code.
* The genetic codes will be obtained from https://ftp.n…