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**Describe the bug**
I am unable to get exactly the same Arrow files when using BAM and fragment file inputs from the same data set. For example, using the possorted_bam output from 10x and the fragm…
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I was excited to find this package, mainly being interested in labeling rivers. I couldn't get it to print any label text using geom_textsf, though, and it only printed a couple of the actual river f…
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Prima facie, `psifr` seems well-suited for use in R via its reticulate library. Even though it is written in Python, `psifr` is well-suited for R because its numerical outputs are Data Frames, rather …
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I am running into an issue with `TSSEnrichment`. When I run `TSSEnrichment` on my multimodal seurat object:
```
> TSSEnrichment(seuratObject, fast = T)
Extracting TSS positions
Extracting fragment…
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It would be nice to have more alternatives for the `layout` argument in `geom_dots()` and friends, as discussed [here](https://fediscience.org/@mjskay/109467481228076107).
Specifically, I have in m…
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# Idea: set axis manually with scale_y_discrete and use patchwork or cowplot for automativ alignment
# https://stackoverflow.com/questions/51784640/ggplot-how-to-retrieve-values-for-axis-labels
#h…
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HI, I download the data example and go through the pipeline of Signac, when I ran TSSPlot, I got such error ,I repeated several times and could not resolved it.
> TSSPlot(pbmc, group.by = 'high.tss')…
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Is there already a way to build something like a sina plot with existing layers/stats? If not, geom_sina would be a nice enhancement (a la [ggforce](https://www.rdocumentation.org/packages/ggforce/ve…
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The filterGiotto command does not follow the filtering criteria given to it. For example, in the following code:
```
library(Giotto)
library(data.table)
library(magrittr)
library(ggplot2)
libr…
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We could have a convenience constructor for rules (by assigning insets, or perhaps by exposing a length option on rules) that lets them be used to create rug plots, similar to [geom_rug in ggplot2](ht…