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I noticed there are a few uses of ```from xml.etree import ElementTree as ET``` which is a known insecurity https://docs.python.org/3/library/xml.html#xml-vulnerabilities
Wonder if it might be wort…
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#### Problem description
Hello,
I want to use a context to safely change the C source, compute an FBA and then display the summary. I was surprised to see that the changes introduced in the cont…
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### Description of the issue:
I am trying to grow the model with the "ham" minimal media
The metabolites I was given of the Ham MM are:
arginine
histidine
lysine
methionine
phenylalanine
try…
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**Describe the bug**
Want to able to show the output of the Montreal Protocol Gasses, and any other FGasses and Halogasses, as well as organic carbon and Ammonia. live.magicc.org supports the abili…
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### Details of support request
I'm doing a coupled model run using CLM_CO2_TYPE=prognostic with CESM2.
The run is aborting a few years in with the error message and stack traceback:
239: ENDRUN:
…
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a single set of European quotes causes a parse error (as expected), but if there are some number more, it causes a panic.
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Dear Siomnom,
I am learning how to use PyCHAM. Since installed PyCHAM by Conda, I tried to run a simple model. However, I met always the problem of "Could not find...." (you can see the capture in …
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Cobrapy user guide explains how to do gapfilling when we want to guarantee that the organism objective is to grow or guarantee a certain metabolite is produced.
Is there a cobrapy function equivalent…
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The following calculate the geoneutrino ratios from the model output:
- [x] Add Th/U_geo (a_Th / a_U) using WebApp paper Eq. 33
- [x] Add K/U_geo (a_K / a_U) using Web App paper Eq. 34
The follow…
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Currently, glutathione is present as a metabolite needed in the biomass reaction. I cannot find any experimental indication as to why this was initially added.
A problem we currently have is that we …