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@davek44 it's me again. we have run the ATAC-seq of pig to train the models, and then want to predict the effects of SNPs across the open chromtain regions. we noticed that you provided two scripts t…
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Dear Vadim,
thanks for the amazing software!!!
I just reanalyzed diaPASEF data from the Mann Lab (quadruplicate HeLa data using 30 SPD from https://www.mcponline.org/article/S1535-9476(22)00087-…
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something, MUMmer, bedtools, primer design
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I would like to make a small feature request and I hope that this way of communication is the right one:
In N-terminomics, we look at sequences that are N-terminally truncated but always have a tr…
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Hello,
I want to extract the 1/k0 values for my precursors from my DIA-PASEF run. In the DIA-NN output there are two ion mobility entries: IM and iIM that are slightly different. What is the exact …
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(Posting here because the forked repo doesn't have issues: @gavinha, you might want to enable them)
A couple of papers suggested that selecting DNA fragments that match nucleosome size, or slightly…
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There are some pipelines that only make sense to run given some conditions which in some cases can be automatically detected through the results of other pipelines.
For example, if you wish to automa…
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Dear developers,
I am unsure why the maximum variable modification option is not working. Do you have any suggestions? I am also not getting any results when running the software. What could be the …
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### Description of feature
The DNPM KDS draft includes a set of clinically relevant scores which can be calculated and derived from data generated during alignment and variant calling. As a long-term…
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This project is really great! I wish I better understood JavaScript, but I
don't have time to learn it.
What I am wondering is whether or not you could (and would) be able to
easily add sorting …