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This issue is meant for crowdsourcing knowledge about joining NGS/VCF-derived variant databases, which the GA4GH schemas are oriented towards, and clinical variation databases, which tend to prefer [H…
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I just pulled the newest development branch and packed it with maven. I also used the actual data from the FTP website.
My command:
```
java -Xms5g -Xmx5g -jar exomiser-cli-6.0.0.jar \
--prioritiser…
visze updated
9 years ago
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Hi!
It seems I am running into a common problem with Headers but can't figure out how to solve it.
I am using PyVCF-0.6.7-py2.7-macosx-10.5-x86_64 and try to iterate records on a VCF file and get thi…
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Hi Brad,
I am trying to use bcbio-nextgen to analysis whole-exome seq data. However, an error stopped the process, the detailed info is:
[2014-09-02 22:42] Finalizing variant calls: C3, freebayes
[2…
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I'm a newbie to python and am having trouble understanding why I can't parse my vcf file. Any help would greatly be appreciated!! Thanks so much.
for record in vcf.Reader(open('all.mergedSNPs.vcf',…