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Hello Microbiome Group,
I am a bit confused regarding the correlation between microbiota and metadata by Heatmap using Microbiome package. Do I need to normaliz…
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@joncison
I found some collection ids that have length > 50 which is not conforming to the schema 3.0.0 changes. Is this something we need to enforce, perhaps it can be 100.
Here is a list of a…
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As I mentioned, each student will have a "project" that results in a "product". Do you have any preference to what such project is involved with? What is one idea that comes to mind based on the readi…
sr320 updated
5 years ago
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Hello,
I try to find a correlation between taxa at genus level and different covariates of my dataset, for example genotype. I used this code:
#subset samples
```{r}
bloc = c("GroupB")
# Here's…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/nlhuong/TimeSeriesExperiment
Confirm the followin…
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Hi,
I just had a miseq run which i analyzed by Qiime preprocessing and Qiime visualtinl apps. However, I am not able to view the (beta-diversity) PCoA plots from the index.html link. Every time I cli…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/KonradZych/SIAMCAT
Confirm the following by editi…
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I need to make a fasta file of sequences from bacterial taxonomic groups that one would expect to find in Taylor hatchery water. Any candidates? I can go through the literature and choose them, but I …
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@marina-manrique suggests that in #82. Thoughts?
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Hi Joey711,
I have been trying to import a biom file that I generated with qiime, the file is binary file, it seems that is new format for this kind of files, then when trying to work with it in R I …