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ohnosequences
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mg7
Configurable and scalable 16S metagenomics data analysis
https://goo.gl/y3rZFD
GNU Affero General Public License v3.0
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Split should accept both zipped and unzipped reads
#137
laughedelic
opened
6 years ago
0
Same notification topic for all steps
#136
laughedelic
opened
6 years ago
0
Filter out empty reads on BLAST
#135
laughedelic
opened
6 years ago
0
Update project
#134
laughedelic
closed
6 years ago
1
Update BBH assignment documentation
#133
laughedelic
opened
7 years ago
0
Clusterization for unassigned reads
#132
laughedelic
opened
7 years ago
0
Add per-sample summary information
#131
laughedelic
opened
7 years ago
2
Distinguish no-hits and hits that don't pass the post-BLAST filtering
#130
laughedelic
opened
7 years ago
2
BLAST defaults: leave default e-value
#129
eparejatobes
opened
7 years ago
1
Rename BBH to MSA
#128
eparejatobes
opened
7 years ago
4
Moving the paper to a separate repo
#127
eparejatobes
closed
7 years ago
3
Derive average pident for indirect assignments
#126
laughedelic
opened
7 years ago
1
Fix frequency count calculation
#125
laughedelic
closed
7 years ago
0
Direct counts contain a strange row (second header?)
#124
laughedelic
closed
7 years ago
1
Default parameters presets should be extensible
#123
laughedelic
closed
7 years ago
0
Blast step should create empty output S3 folders
#122
laughedelic
opened
7 years ago
4
Stabilize dependencies
#121
laughedelic
closed
7 years ago
1
Add pipeline name to the loquats IDs
#120
laughedelic
closed
7 years ago
0
Hidden BLAST features
#119
laughedelic
closed
7 years ago
2
Update dependencies
#118
laughedelic
closed
7 years ago
0
Flash warnings
#117
laughedelic
closed
6 years ago
4
Preprocessing of Mock communities reads
#116
marina-manrique
closed
7 years ago
5
Specify test input data
#115
eparejatobes
closed
7 years ago
10
Problem with fully-qualified names
#114
laughedelic
closed
8 years ago
3
First value in BLAST output does not need to be the one with maximum pident
#113
eparejatobes
closed
8 years ago
6
Upgrade loquat dependency to refactor pipelines code
#112
laughedelic
closed
8 years ago
7
Update test dependencies to db.rna16s v0.10.0
#111
laughedelic
closed
8 years ago
0
Explain the interplay between mapping and assignment
#110
eparejatobes
closed
7 years ago
0
highlight reference characteristics and construction
#109
eparejatobes
closed
7 years ago
0
reference database construction figure
#108
eparejatobes
closed
7 years ago
1
Remove stats/summary steps
#107
laughedelic
closed
8 years ago
0
Review test input data at S3
#106
eparejatobes
closed
7 years ago
10
Test data pipelines
#105
eparejatobes
closed
7 years ago
16
Test data description
#104
eparejatobes
closed
7 years ago
10
test data meeting
#103
eparejatobes
closed
8 years ago
7
Add PacBio 16S test data run
#102
eparejatobes
closed
8 years ago
8
Add MG7-specific credentials for AWS
#101
eparejatobes
opened
8 years ago
0
Update build to nice-sbt-settings 0.8.0
#100
eparejatobes
closed
8 years ago
2
Finish general review
#99
laughedelic
closed
8 years ago
0
Refactor counts loquat file processing code
#98
laughedelic
closed
8 years ago
1
Refactor assign loquat
#97
laughedelic
closed
8 years ago
0
Refactor data mappings generation code
#96
laughedelic
closed
8 years ago
0
make bio4j taxonomy bundle and api a separate project
#95
eparejatobes
closed
8 years ago
6
update links to versions
#94
eparejatobes
closed
7 years ago
0
a paragraph for why the NCBI taxonomy
#93
eparejatobes
closed
7 years ago
1
Add figures/tables for test data results (mock communities)
#92
eparejatobes
closed
7 years ago
3
Add a figure for AWS architecture
#91
eparejatobes
closed
7 years ago
2
add a description of the test datasets
#90
eparejatobes
closed
7 years ago
3
update the assignment algorithms section
#89
eparejatobes
closed
7 years ago
4
update the reference DB section
#88
eparejatobes
closed
8 years ago
7
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