-
- Could we create a "Predicted Enhancers" section to replace the "Regulatory Regions" section? Then we can show elements that are predicted to regulate the gene (as on the variant page), rather than …
-
Hi,
I have run simulation for Protein-Ligand Complex with frozen protein, and I save my trajectory in .xtc file via:
```python
md_simulation.reporters.append(
app.xtcreporter.XTC…
-
Searching for the gene symbol "Dmel\Indy" in global search and protein simple search ->
**Production behavior ->**
1. Simple Search:
https://api.glygen.org/protein/search_simple?query=
{"ope…
-
- [x] write about visualization.
- [x] Read background
Todos:
- [x] Title including transcript id, protein id & name
- [x] transcript tract: get exon lengths from `tx_coordinates.get_cds_regions…
ielis updated
2 months ago
-
In some cases we have incomplete cliques that are chemicals and proteins:
- https://github.com/TranslatorSRI/Babel/issues/200
- https://github.com/TranslatorSRI/Babel/issues/232
- https://github.co…
-
**Type**
System Sampling Check
**Question**
Protein still folded?
**Tool**
MDA
**How**
RMSD < 6 - 10 A
**Note**
Size dependent
-
The paper cites the protein vectors in Alshahrani,M. et al. (2017). Did you use exactly the same vectors by Alshahrani,M. et al. (2017)? In this paper Alshahrani,M. et al. (2017), there 6 other databa…
-
There is a discrepancy in the glycosylation summary.
`UAC - Q08048`
On the portal and the API it says there are **`4 site(s) total, 6 N-linked site(s)`**
However, there are only 4 N-linked site…
-
Been looking at the manual and online, but can't figure out what the numbers on those columns (for atoms and alpha spheres) correspond to.
For context, I am referring to protein_out/protein_out.pdb…
-
In 1.5 we had all mappings of Chembl targets to Chembl target components (and then to uniprot) in the default lens, regardless if it is a single protein or a complex or a family. With the IMS reload, …