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Hi Matt,
A girl in my lab is trying to set up ITEP with some bacterial genomes. She ran into an issue: convertGenbank2table.py fails because some of here genbank files (downloaded from RAST) have join…
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Dear all,
The proposal has been made to obsolete
GO:0051767 nitric-oxide synthase biosynthetic proces
GO:0051771 negative regulation of nitric-oxide synthase biosynthetic process
GO:0051770 po…
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# Not-proteins in Parliament - Clare's Blog
My experience as a POST Fellow
[https://clarewest.github.io/blog/post/not-proteins-in-parliament/](https://clarewest.github.io/blog/post/not-proteins-in-p…
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I will likely not implement it in #41 where I planned to because the PR is already enormous. So I write it down here.
We need to support secondary structures for cyclic proteins. Some thought were …
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Need to make multiple protein items?
https://mygene.info/v3/gene/38418
https://mygene.info/v3/gene/856015
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I've been developing a metagenomic/metatranscriptomics software suite called VEBA (https://github.com/jolespin/veba) that natively handles eukaryotic binning of metagenome-assembled genomes and exon-a…
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The values of the nutriments in the json-api are inconsistent.
- For _100g and _value they are strings;
- for _serving it is a number;
`"saturated-fat_serving":0.26,"proteins_serving":7.67,"sugar…
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Reem from Georgetown University has N-glycosylation data for Sulf1 (ID: Q8IWU6) and Sulf2 (Id: Q8IWU5) proteins from paper N-glycosylation occupancy of Sulf2 in an over-expression system (PMID: 370524…
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When I attempt to align _SELENON_ RefSeq transcript NM_020451.2 with it's corresponding protein sequence (NP_065184.2), exonerate reports:
`** FATAL ERROR **: Unknown amino acid [U]`
`exiting ...`…
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Running on PDB ID 1UNC of Villin https://www.rcsb.org/structure/1unc causes the following crash
The issue is that the residue is named GLU but it has a HE2 hydrogen which corresponds to a GLH residue…