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# Describe the problem
* **I'm submitting a:**
- [ ] problem running the software
* **My MSFragger use case:**
- [ ] _Open_ search (large precursor mass tolerance)
** _put your genera…
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# Describe the problem
**Fatal Error: workspace not found. Run 'philosopher workspace --init' to create one or execute the command inside a workspace directory"**
Using the MSFragger/FragPipe iss…
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I tried running philosopher (20181128) on a sample but it fails at the filtering step.
`
./philosopher_linux_amd64 workspace --clean
./philosopher_linux_amd64 workspace --init
./philosopher_linu…
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I am using Arch Linux and have R 3.5.1 installed, alongside netcdf 4.6.1.
I tried the following steps:
source("https://bioconductor.org/biocLite.R")
biocLite("mzR")
The compilation see…
ypnos updated
6 years ago
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It seems the t-coffe node in KNIME is broken:
```console
2018-12-07 15:35:31,554 : DEBUG : KNIME-Worker-7 : NodeContainer : SeqanTcoffee : 2:1 : SeqanTcoffee 2:1 has new state: EXECUTING
2018-12-…
rrahn updated
5 years ago
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# Describe the problem
Hey! I generated my human fasta database by getting all the protein sequences from uniprot (~200 mb, ~500,000 sequences) + common contaminants. I then create a reverse decoy …
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Hi,
I am having an issue processing a huge data set (~1600 files). For convenience I have all the files in the same folder.
I was able to successfully process the data with MSfragger and protein/pep…
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# Describe the problem
FragPipe / MSFragger crashes on number format
* **I'm submitting a:**
- [ ] problem running the software
- [X] bug report
- [ ] feature request
- [ ] question
…
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This thread continues the discussion in #1027. As part of the protein inference beta testing, we aim to reproduce roughly the results from a TPP protein quantification published in [1]. Even with a wo…
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Same as: https://github.com/prvst/philosopher/issues/23
# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [x] bug report
- [ ] feature request
- [ ]…