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Not obvious that it's a speedup to run one IndelRealigner task per chromosome; want to be able to override, esp for test data
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Posted [on the forums](https://www.minecraftforum.net/forums/mapping-and-modding-java-edition/minecraft-mods/2520465-1-12-2-1-11-2-1-10-2-1-8-9-world-downloader-mod?comment=675) by TheOni:
Crash re…
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Getting crash everytime when I join my server ver 4.0.3.1
```
---- Minecraft Crash Report ----
// Oops.
Time: 9/27/18 3:56 PM
Description: Ticking entity
java.lang.ClassCastException: java…
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Hi Mark (@depristo),
Sorry, I meant to put this together a while ago - regarding https://github.com/google/deepvariant/issues/27#issuecomment-364683474 - but got a bit swamped with a research deadl…
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si on a indenté le code avec des sauts de lignes, l'application du formatter les supprime.
Ex (dans StudioRepository) :
`collectPath(paths, gitCache.getFile(directoryPath, false),
…
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In running abra2, I'm hitting this runtime exception:
```
INFO Thu Nov 02 15:50:04 UTC 2017 Abra version: 2.11
INFO Thu Nov 02 15:50:04 UTC 2017 Abra params: [/hemp/abra2-2.11.jar --tmpdir /hemp/…
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Hi,
I found a small bug when using a BED with with browser/track header for k-mer size calculation, e.g. this file:
>browser position chr1:12081-12251
>track name="Covered" description="Agilent…
imgag updated
7 years ago
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Any thoughts on how to get around this error? It's executed as:
abra2-2.09.jar --in B.bam --out B_realigned.bam --ref hg19.fa --targets targets.bed --threads 12 --tmpdir ABRA_tmp_B --mad 999999 --mr…
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Hi,
I have been successfully using ABRA 2 on single end data, but versions 2.07 and above crash with this error:
```
java.lang.IllegalStateException: Inappropriate call if not paired read
at ht…
mfoll updated
7 years ago
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Tried several input configuration but keep getting stuck at this error:
java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
at java.util.ArrayList.rangeCheck(ArrayList.java:653)
at java.util…