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Hi
I'm trying to use `SoupX` to remove contamination from single nuclei RNAseq. I've run it (with default settings) on our samples, and I thought I would check the estimated proportions against the…
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Fill in as much as seems useful:
**Describe the issue**
Data provider confusion for submitted data with bracketed pipeline type in title and ideas on attribution between data providers and HIVE ..…
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Hello,
I was trying out the Visium example, but couldn't find the marker gene data that is used to subset relevant markers.
The exact file that I think missing is "spacejams_visp_markers.pkl". It …
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**Describe the bug**
It seems that multiple workflows coming from one GitHub repo might be linked in some way. The symptom is that it appears that setting the default branch in one of the workflows mi…
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I found 2 terms in EFO referencing "snRNA-seq" (single nucleus RNA sequencing).
snRNA-seq http://www.ebi.ac.uk/efo/EFO_0008940
single nucleus sequencing http://www.ebi.ac.uk/efo/EFO_0009809
EF…
anjaf updated
3 years ago
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**Primary Wrangler:**
Marion
**Secondary Wrangler:**
Ray
**Associated files:**
Google Drive:
https://drive.google.com/open?id=1LA9gWB3uCuoRo7OSY6tNZEGTLo4R1GXh
**Published study lin…
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In the file `level-1.yaml` the assay type is defined as `scRNAseq-10xGenomics`. However, in the test dataset from the data provider, it is defined as `snRNAseq-10Xgenomics` in the metadata.tsv file.
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Hi, Is there is a way how to add description to my cellxgene instance ?
such as in the below instance
https://cellxgenevip-ms.bxgenomics.com/