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https://www.biorxiv.org/content/10.1101/2024.06.06.597812v1
https://github.com/lahammond/RESPAN
Accurate and unbiased reconstructions of neuronal morphology, including quantification of dendriti…
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### Active Development
Yes
### Move source code
No
### Tool name
CruzPlot
### Tool abbreviation
CruzPlot
### Author(s)
Sam Woodman, Tim Gerrodette
### Contributor(s)
_No response_
### Tool…
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Here is a copy of the notes I've compiled after our meeting and while thinking/reading on the topic. I put it here to help for our next meeting. Many pieces of the process are still unclear to me and …
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-develop sql query like arcmap spatial analysis zonal tabulate area function for overlaying spatial data sets on lateral shed polygon
-develop module for aggregating / summarizing network watershed st…
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Hello, when I finished running Cottrazm and checked the results, it seems there is an issue with the prediction of malignant regions (mainly that the predicted malignant regions appear to be non-malig…
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Hello, can you provide the data for analysis in visium_human_dorsolateral_prefrontal_Cortex.r?
I can get the raw data, but I'm not sure what goes from the raw data to the data for your analysis.
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Here's a plan to enhance TxtAI with geospatial and temporal search capabilities:
**1. Extend indexing for geospatial data:**
- Use GeoPandas for geospatial data handling, as it integrates well …
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Congratulations for this nice work!
I wonder if it is possible to use SpaceFlow for trajectory analysis of spatial data from merfish (single-cell level)？
Thanks!
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**Describe the bug**
There is no option to choose a subset of FOVs in the k-means neighborhood notebook. Discovered by Avery.
Currently, the notebook gets all FOVs in the cell table (`all_fovs = a…
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I am trying to analyze my spatial transcriptomics data generated from 10X Genomics Visium using the stCancer package. However, when running the stStatistics() function, I encounter the following error…