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mleiwe
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PathologyRegistrationPipeline
A Project for the Merbl lab at Cornell. The aim is to create a registration pipeline whereby large .bif files of histological sections can be put in registration with an MRI template in order to view the anatomy in high resolution.
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Try out warpy pipeline to see if it will work on a single image
#13
mleiwe
opened
2 weeks ago
1
Find some example bif files to stitch
#12
mleiwe
opened
2 months ago
0
Identify a dog brain MRI template as a test
#11
mleiwe
opened
2 months ago
1
Determine end computation requirements
#10
mleiwe
opened
2 months ago
0
Link to GitHub Repository
#9
mleiwe
opened
2 months ago
0
Perform a literature/software review.
#8
mleiwe
opened
2 months ago
0
Set a regular sprint meeting plan
#7
mleiwe
opened
2 months ago
0
Add Yael to the board
#6
mleiwe
opened
2 months ago
0
Determine output visualisation
#5
mleiwe
opened
2 months ago
0
Background for literature search
#4
mleiwe
opened
2 months ago
0
Initial Workflow:
#3
mleiwe
opened
2 months ago
0
Read An Open-Source Whole Slide Image Registration Workflow at Cellular Precision Using Fiji, QuPath and Elastix
#2
mleiwe
opened
2 months ago
1
Familiarise myself with the files and qupath
#1
mleiwe
opened
3 months ago
1