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Currently, ATSyRA uses a conversion to GAL (https://lip6.github.io/ITSTools-web/gal.html) in order to get its behavior implementation and use ITS model checker for efficient search.
However ITS mo…
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Discussed today re: #444. This would make things like [`this._tree.getTotalLength()`](https://github.com/biocore/empress/blob/dc146db32fe0d1bb655af9b7d14fdc253d641653/empress/support_files/js/empress.…
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A number of times now (particularly for tsinferred trees), I have wanted to get the tMRCA of all the sample nodes. This is not equivalent to the root in tsinferred trees, as there can be unary nodes a…
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Represent the combined state of all of the JS in the project.
Notes from meeting with Erik:
- Try to reduce to the single file problem by going through the "import" graph and adding them together as o…
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@jdlara-berkeley @carmentubbesing
The trees/acre resulting from the LEMMA analysis are very high ( 50 then 'Cable Manual WT' end "System", round(avg(density_tree_m2*4046.86)) "CT/ac" from cost_res…
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Hello,
I'm going through the tutorial (https://sctriangulate.readthedocs.io/en/latest/tutorial.html), with provided h5 file (http://altanalyze.org/scTriangulate/scRNASeq/pbmc_10k_v3.h5).
I use J…
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Dear Emmanuel,
first of all, thanks for this amazing package.
I just found an unexpected behavior when i was trying to run `splits::gmyc()` over a set of post-burnin files from BEAST2 using `p…
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We are planning that this package will integrate tightly with other packages from our group, including [`sknnr`](https://github.com/lemma-osu/sknnr) and [`sknnr-spatial`](https://github.com/lemma-osu/…
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Currently, there are no `Documents` corresponding to `#load`ed `SyntaxTrees` in the `Workspace`. The "external" set of `SyntaxTrees` (known to the `Workspace`) are passed to the `Compilation` when it…
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## What feature are you suggesting?
### Overview of feature and why would this feature be useful:
It would be useful to have an option that acknowledges classes of objects that lie into so…