biocore empress issues - Githubissues

biocore / empress

A fast and scalable phylogenetic tree viewer for microbiome data analysis

BSD 3-Clause "New" or "Revised" License

48 stars 31 forks source link

issues

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Qiime2-2024.5 and empress - scikit-bio issue

#566 ARW-UBT opened 1 month ago
4
Error installing empress in conda/docker container

#565 jRaffill closed 1 month ago
3
Fix GitHub Actions builds

#564 fedarko opened 3 months ago
0
Fix BP tree corruption due to numpy uints

#563 fedarko opened 3 months ago
0
numpy 2 breaks the int-encoding representation of the BP tree

#562 fedarko opened 3 months ago
0
standalone empress tree-plot generates html that get stuck in loading screen

#561 YasinEl closed 3 months ago
3
McHelper QZV links don't load on q2view (expired certificate?)

#560 fedarko closed 2 years ago
2
Add option to overwrite files when directory exists

#559 gibsramen opened 2 years ago
0
Option to overwrite existing directory

#558 gibsramen opened 2 years ago
4
Race condition / itermittent failure in one of the barplot tests

#557 fedarko opened 2 years ago
0
Support discretization as an alternative to continuous coloring

#556 fedarko opened 2 years ago
0
Document a few dependencies more clearly in the README, and also work on fixing the build

#555 fedarko closed 2 years ago
4
Adding midpoint coloring

#554 mortonjt opened 2 years ago
1
Document dependence on binutils

#553 fedarko closed 2 years ago
0
Error installing Empress

#552 OliverAshton1 closed 2 years ago
3
Allow settings import/export

#551 jwdebelius opened 3 years ago
6
Document dependence on Xcode for macOS systems

#550 fedarko closed 2 years ago
0
Trying to install using the comand in the instructions but get always the same error

#549 cortegas closed 3 years ago
6
Adding info on feature metadata format in README

#548 Robaina opened 3 years ago
3
[WIP] Exploring a group of selected nodes by highlighting the path connecting them and providing tools to better compare their metadata.

#547 kwcantrell opened 3 years ago
8
Add convenience method to empress.js that gets the 0-based index of a feature metadata column

#546 fedarko opened 3 years ago
0
sorted all menus

#545 kwcantrell opened 3 years ago
10
Update setup.py PyPI classifiers

#544 fedarko closed 3 years ago
3
DOC: Small README tidying

#543 fedarko closed 3 years ago
2
Possible for Empress tree coloring to break when using timed events in Empire plots

#542 fedarko opened 3 years ago
0
changed control to empress-control

#541 ghost closed 3 years ago
3
Use a more specific class name than 'control' in Empress' CSS

#540 fedarko closed 3 years ago
2
Allow explicitly passing data to make-dev-page.py without including feature metadata

#539 fedarko closed 3 years ago
4
TST: fix spacing (?) in main.yml file re: McHelper

#538 fedarko closed 3 years ago
3
🐧🚑 add mchelper back to GitHub actions

#537 ElDeveloper closed 3 years ago
2
REL: bump version to 1.2.0-dev

#536 fedarko closed 3 years ago
0
Bump version number to v1.2.0 for release; update README screenshots and text

#535 fedarko closed 3 years ago
0
Continue legend overflow on new line

#534 kwcantrell opened 3 years ago
1
Don't resize legend when changing non-color-related things?

#533 fedarko opened 3 years ago
0
Need to un-hide "Update" buttons when enabling sample / feature metadata coloring tabs after finishing an animation

#532 fedarko opened 3 years ago
0
Error when running with greengenes taxonomy files, integer ID field causes type issue

#531 mstapylton opened 3 years ago
4
added flag to make-dev-page so that only tree plot is created

#530 kwcantrell closed 3 years ago
3
set the min, middle, max value of the colorbar

#529 maque4004 opened 3 years ago
2
Length legends' SVG exporting logic doesn't account for long titles

#528 fedarko opened 3 years ago
0
BUG: Draw node circles as needed in SVG export

#527 fedarko closed 3 years ago
1
Inconsistent state after barplot errors

#526 fedarko opened 3 years ago
2
Improves error handling when "shear" but no metadata passed

#525 ChrisKeefe closed 3 years ago
2
Separate McHelper into a separate GitHub action from the Main CI

#524 fedarko opened 3 years ago
0
commented out McHelper temporarily

#523 kwcantrell closed 3 years ago
0
updated the error message for missing features

#522 ericap258 closed 3 years ago
5
[WIP] select min/max of color gradient

#521 kwcantrell opened 3 years ago
28
Standalone raises incorrect parameter error

#520 ericap258 closed 3 years ago
1
Use toastr to support showing multiple toast messages at once, with a fancy UI

#519 fedarko closed 3 years ago
4
Center diverging colormaps at 0

#518 jwdebelius opened 3 years ago
3
McHelper is failing to connect

#517 kwcantrell closed 3 years ago
4