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biocore
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empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis
BSD 3-Clause "New" or "Revised" License
48
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31
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throttled onwheel event
#516
kwcantrell
closed
3 years ago
4
Fix resizing in main legend when coloring tree by feature metadata gradient with non-numeric warning message
#515
fedarko
opened
3 years ago
0
Small side panel formatting fix: hide button <p> containers instead of buttons; fix prev/next frame animation buttons
#514
fedarko
closed
3 years ago
4
Replace high-level <p> tags with <div>
#513
fedarko
opened
3 years ago
0
Automatically resize main legend when changing tree coloring
#512
fedarko
closed
3 years ago
2
Feature metadata is being dropped
#511
mortonjt
closed
3 years ago
5
Add node count per metadata category.
#510
ElDeveloper
opened
3 years ago
2
Support adjusting end angle of circular layout
#509
fedarko
opened
3 years ago
2
Use smoother curves to draw circular layout barplots for trees with only a few tips
#508
fedarko
opened
3 years ago
0
Update README to use snazzy new GitHub menu
#507
gibsramen
closed
3 years ago
3
Enable stacked barplots for feature metadata
#506
FranckLejzerowicz
opened
3 years ago
3
Shear UI
#505
kwcantrell
closed
3 years ago
17
[WIP] Barplot clicking
#504
fedarko
opened
3 years ago
1
Show text labels alongside tips
#503
neptuneyt
opened
3 years ago
4
BLD: Small tweaks to GH Actions workflows
#502
fedarko
closed
3 years ago
2
Get Tree Tip Label by Rectangular Layout
#501
neptuneyt
closed
3 years ago
3
Add simple standalone example data
#500
fedarko
opened
3 years ago
1
Creates new GitHub Action for standalone testing
#499
gibsramen
closed
3 years ago
1
TST: Trying to bring back mchelper 🐧
#498
ElDeveloper
closed
3 years ago
4
TST: Trying to bring back mchelper 🐧
#497
ElDeveloper
closed
3 years ago
1
Explicitly test standalone installation / tests in the CI
#496
fedarko
closed
3 years ago
2
Fix bug with running standalone version; account for NumPy dependency in standalone install instructions; a few small changes w/r/t node circle options
#495
fedarko
closed
3 years ago
1
DOC: Add to citations.bib for QIIME2
#494
ElDeveloper
closed
3 years ago
3
citation update
#493
kwcantrell
closed
3 years ago
3
Tree controller
#492
kwcantrell
closed
3 years ago
5
Support for highlighting path between selected nodes
#491
mestaki
opened
3 years ago
8
Dynamic bp tree
#490
kwcantrell
closed
3 years ago
3
Support alternate (smaller) display for taxonomy levels with ancestor information
#489
fedarko
opened
3 years ago
1
Disable automatic update when clade collapsing is clicked
#488
kwcantrell
opened
3 years ago
0
Use ancestor information in taxonomy feature metadata (only computing ancestor info in the JS interface)
#487
fedarko
closed
3 years ago
8
Node default
#486
kwcantrell
closed
3 years ago
1
Fixes error when no feature metadata file is provided
#485
ahdilmore
closed
3 years ago
2
Gradient Coloring Option for Feature Metadata
#484
kwcantrell
opened
3 years ago
14
New color map
#483
kwcantrell
closed
3 years ago
3
[DON'T MERGE THIS PLS] Include ancestor information in processed taxonomy feature metadata
#482
fedarko
closed
3 years ago
1
Add optional abbreviated parameters for the standalone CLI; add some more context to the README
#481
fedarko
closed
3 years ago
0
Strip whitespace around node names?
#480
fedarko
opened
3 years ago
0
Show node circles by default
#479
ElDeveloper
closed
3 years ago
2
Wrote image links explicitly
#478
96RadhikaJadhav
closed
3 years ago
1
Write out README image links explicitly
#477
fedarko
closed
3 years ago
3
REL: bump version number to 1.1.0-dev, and also add a PyPI version number badge while we're at it
#476
fedarko
closed
3 years ago
1
REL: bump vsn number for 1.1.0 release
#475
fedarko
closed
3 years ago
1
Trigger McHelper from new CI in GitHub Actions
#474
fedarko
closed
3 years ago
1
Respect ancestors in feature metadata coloring/propagation
#473
fedarko
closed
3 years ago
2
make _to_dict() public
#472
kwcantrell
closed
3 years ago
0
Project phylogeny up tree if provided
#471
kwcantrell
opened
3 years ago
20
Can Empress._to_dict be made public?
#470
gwarmstrong
closed
3 years ago
4
Should qiime2 dependencies for empress be explicitly documented?
#469
gwarmstrong
opened
3 years ago
2
Rerun GitHub Actions on push events to master; update dev documentation to mention a weird thing with JS tests
#468
fedarko
closed
3 years ago
2
It looks like GH actions jobs aren't getting triggered when we merge stuff into master
#467
fedarko
closed
3 years ago
0
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