-
Hi @mhoban ,
I've been investigating why we are losing so many zotu in LCA or getting assignments of zotu to more specific taxa than we thought prudent, I noticed that the `qcov` filter in the bloc…
-
* eggnog2gbk version: emapper2gbk 0.3.0
* Python version: 3.10.1
* Operating System: Ubuntu 20.04
* eggnogmapper: 2.1.9
### Description
I used the `genes` mode to get the gbk from my genomes,…
-
Hello,
I was hoping you might have some advice about understanding an issue I am running into with some microbiome samples (fungal community in soybean at ITS region).
The issue has to do with i…
-
hi there, I'm having an issue I hope you can help with. the checks were okay, but there is an error during the training process. I attached the log file,(let me know if you can access that alright). …
-
#### Introduction
Inspired by the article of Schaeffer et al. (2016), I attempted to use salmon to quantify the proportion of bacterial reads in a paired-end DNA sequencing experiment. I use "mash …
-
## Expected Behavior
I thought mmseqs would be quite quick to annotate a single MAG
## Current Behavior
I am using the SemiBin GTDB database for mmseqs (https://zenodo.org/record/4751564/files/GT…
-
Dear All,
I am a newbie with the use of R to analyze 16s sequencing data. Recently, I have sequenced some difficult specimens where eukariotic DNA is almost a problem. Fortunatly, I have obtained a…
-
Would be great to have the loadings associated with each OTU from a PCoA to better explore the taxonomic differences between samples/treatments. This can also be done by comparing OTU abundances with…
-
**Dataset title**
Genome Taxonomy Database (GTDB)
**Dataset contact & access**
https://gtdb.ecogenomic.org/
https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/ar122_taxonomy.tsv
https:…
-
Hello,
We am looking to contribute a new classifier to the Qiime project. We
recently released Quikr (https://github.com/EESI/quikr,
http://bioinformatics.oxfordjournals.org/content/29/17/2096), and
…
ghost updated
11 years ago