biocore qiime issues - Githubissues

biocore / qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

GNU General Public License v2.0

285 stars 269 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

update qiime.org landing page

#2234 gregcaporaso closed 1 year ago
2
Multiple_join_paired_ends.py output files names

#2233 chwang740 opened 1 year ago
0
ValueError: Could not interpret optimizer identifier: <module 'scipy.optimize' from 'C:\\Users\\shani\\Anaconda3\\lib\\site-packages\\scipy\\optimize\\__init__.py'>

#2232 shanikumarpatel opened 2 years ago
0
Problems using count_seqs.py with joined reads

#2231 andso17 opened 2 years ago
1
I got problem when running qiime2 env

#2230 VesperLiK closed 3 years ago
1
I have a big problem help me!!

#2229 ghost closed 2 years ago
0
Support for usearch11 version for parallel_map_reads_to_reference.py

#2228 jianshu93 opened 4 years ago
0
Help with ClustalW..

#2227 AlliKoehle opened 4 years ago
0
Basespace Google key issue

#2226 Suchita-Tandon closed 4 years ago
1
If the QIIME2 can analysis the data of Single Molecule Real-Time Sequence

#2225 MengZhang2019 opened 4 years ago
0
Heatmap does not show differentiation

#2224 nicey1995 opened 4 years ago
0
OTU table including fasta sequences

#2223 arsilan324 opened 4 years ago
0
Alpha Diversity Boxplots

#2222 Newman-Wang opened 5 years ago
0
Symbols

#2221 ma680 opened 5 years ago
0
unable to install usearch

#2220 jdhenaos opened 5 years ago
0
info -e

#2219 megthommes opened 5 years ago
0
Why some of the samples are missing during OTU picking?

#2218 arsilan324 closed 5 years ago
1
Alpha_rarefraction.py error

#2217 santhoshnh opened 5 years ago
1
biom-format does not pip install on python3.7

#2216 rwst closed 5 years ago
1
incorrect value for phred_offset in qiime

#2215 hallerliran opened 5 years ago
1
Multiple input file without barcode

#2214 341996 opened 6 years ago
0
Problems with 454 Overview Tutorial: de novo OTU picking and diversity analyses using 454 data in Qiime 1.9.1 VirtualBox

#2213 srmacben closed 6 years ago
0
Qiime's requirements result in pip trying to install a broken version of emperor

#2212 owainkenwayucl closed 6 years ago
4
split_libraries.py -- issue

#2211 shrutidabral opened 6 years ago
0
Broken links

#2210 albacrespi opened 6 years ago
0
significant unexpected behavior in `split_sequence_file_on_sample_ids.py`

#2209 wdwvt1 opened 6 years ago
1
Error constructing CommandLineAppResult - assign_taxonomy.py

#2208 KeironO closed 6 years ago
1
Fix zero length barcode options for extract_barcodes.py

#2207 walterst opened 6 years ago
0
What's the difference between collapsed modes "mean vs sum"

#2206 genetalks-fred closed 6 years ago
1
filter_$(otus/samples)_from_otu_table.py do not work, returned error: object dtype dtype('O') has no native HDF5 equivalent

#2205 apascualgarcia closed 6 years ago
4
Trying to convert txt. file to biom file

#2204 Acetylcholine88 closed 6 years ago
1
Unable to Generated Google Key for mapping file on BaseSpace App

#2203 ruchan opened 6 years ago
6
Losing too many reads after removing primers and joining

#2202 Biancabrown closed 6 years ago
1
Qiime Install error : Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-cxxn7r0i/qiime/

#2201 myshu2017-03-14 closed 6 years ago
2
I have Plugin error from demux

#2200 hulqi closed 6 years ago
1
Cd-hit with QIIME

#2199 eilenilec closed 6 years ago
1
assign_taxonomy.py error

#2198 bioinfo17 closed 6 years ago
0
Software Licence

#2197 rockysiu opened 6 years ago
1
DOC/BUG: fix broken BLAST download links

#2196 jairideout closed 6 years ago
1
beta_significance.py doesn't respect quotes in .tre sample names

#2195 justin212k opened 6 years ago
0
quickfix URL for blast in non-conda install

#2194 colinbrislawn closed 6 years ago
4
avoid np.diff on binary array

#2193 justin212k opened 7 years ago
0
plot_taxa_summary no html file

#2192 Ros938 closed 7 years ago
1
Doesn't install properly on Ubuntu 16 LTS

#2191 xapple closed 7 years ago
5
Error when attempting to install qiime on Mac OS X

#2190 foreignsand closed 7 years ago
2
Make a modernized (i.e., Python > 3.5) QIIME friendly to fungal microbiomes

#2189 ajpowel closed 7 years ago
3
Modernize QIIME for installation and use with Python 3.5

#2188 ajpowel closed 7 years ago
1
joining barcodes in dual-index, paired-end sequencing using fastq.join

#2187 Acetylcholine88 closed 7 years ago
1
Pick_otus.py -m swarm doesn't take all of my reads into account

#2186 anais64 closed 7 years ago
1
Memory issues and OTU picking.

#2185 Biancabrown closed 7 years ago
1