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qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
GNU General Public License v2.0
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Qiime User Interface
#2184
patthehat033
closed
7 years ago
8
remove zero abundance OTUs after filtering samples
#2183
ConstantinoSchillebeeckx
opened
7 years ago
1
MAINT: Site down due to deprecated Google API
#2182
jakereps
closed
7 years ago
3
computer is 64bit, but qiime virtual box only shows 32bit options
#2181
fpwilson
closed
7 years ago
1
Pypi release syntax error
#2180
corburn
opened
7 years ago
1
Error in multiple_extract_barcodes.py: Positional argument detected: True
#2179
LaraMacheriotou
closed
7 years ago
1
conda installation issue
#2178
ynakhli
closed
7 years ago
2
Uclust OTU picking exact match prefilter doesn't use the temp dir in qiime_config
#2177
greggiceton
opened
7 years ago
1
installing qiime in Windows System for Linux (WSL)
#2176
pitrack01
closed
7 years ago
1
rep_set_picking_method not being used
#2175
marijazmf
closed
7 years ago
1
valueError while using assign_taxonomy.py
#2174
bioinfo17
closed
7 years ago
0
parallel_assign_taxonomy_blast.py error
#2173
microbiaki
closed
7 years ago
3
Cytoscape tutorial is outdated
#2172
AlexanderPico
opened
7 years ago
3
Understanding assign_taxonomy.py output
#2171
yingeddi2008
closed
7 years ago
2
SWARM and number of reads
#2170
jeandavidgrattepanche
closed
7 years ago
1
Error in merge_otu_tables.py: No filepaths match pattern/name
#2169
jjandshi
closed
7 years ago
1
plot_taxa_summary.py script should output pie chart and the corresponding legend in the same image file
#2168
lakhujanivijay
opened
8 years ago
1
Update join_paired_ends.py
#2167
shiffer1
closed
8 years ago
6
DOC: updates install instructions to use conda
#2166
gregcaporaso
closed
8 years ago
12
Revert "New installation instructions using Conda"
#2165
gregcaporaso
closed
8 years ago
0
updates install instructions to use conda
#2164
gregcaporaso
closed
8 years ago
1
A problem occurs when use core_diversity_analyses.py
#2163
imleunghl
closed
8 years ago
2
New installation instructions using Conda
#2162
cuttlefishh
closed
8 years ago
13
Samples filtered down to 0 sequences in otu_table_w_tax_no_pynast_failures.biom
#2161
lkursell
opened
8 years ago
2
SUMACLUST is launched with 1 thread in multi-thread mode
#2160
stevendbrown
closed
8 years ago
1
Error messages when normalizing with DESeq2 and CSS
#2159
kathfi
closed
8 years ago
1
Python 3 Syntax Error In 1.9.1 Preventing pip3 Install
#2158
Krailon
closed
8 years ago
1
Error messages when normalizing with DESeq2 and CSS
#2157
kathfi
closed
8 years ago
3
Improve --valid_states example
#2156
colinbrislawn
opened
8 years ago
1
bcl 2.17 there is a "+" in barcode
#2155
feifeialex
opened
8 years ago
0
differential_abundance.py mapping file subcategory/group order in output file
#2154
borax
closed
8 years ago
1
make_phylogeny.py with raxml does not remap tip names
#2153
wasade
opened
8 years ago
0
Outdated links on install page
#2152
wasade
opened
8 years ago
3
improve doc for filter_fasta (--valid_states)
#2151
iugrina
closed
8 years ago
9
Installation instructions on qiime.org are unnecessarily complex
#2150
cuttlefishh
opened
8 years ago
2
Python process unicode problem
#2149
kaitaolai
closed
8 years ago
0
Fix group significance documentation typos
#2148
gblanchard4
closed
8 years ago
4
differential_abundance.py error
#2147
hotblast
closed
8 years ago
1
IOError: [Errno 13] Permission denied: '/usr/local/lib/python2.7/dist-packages/pathlib2.py
#2146
Wnegara
closed
8 years ago
1
MAINT/TST: dependency version cap; "fix" broken bootstrapped p-value test
#2145
jairideout
closed
8 years ago
12
DOC: updates to point new devs toward QIIME 2
#2144
gregcaporaso
closed
8 years ago
0
Mnt remove pylab imports in favor of `pyplot`
#2143
tacaswell
closed
8 years ago
19
Logging in
#2142
nds2133
closed
8 years ago
2
how to change arb format reference database as a reference database for assign.taxonomy.py script?
#2141
LuffyLuffy
closed
8 years ago
1
Run aborted in QIIME Visualization app due to error in make_emperor.py
#2140
SantoshThapa1
closed
8 years ago
1
What should I put in the Barcode and LinkerPrimer sequences in QIIME Mapping file ?
#2139
SantoshThapa1
closed
8 years ago
11
Problems of run abort with QIIME Visualizations apps on Illumina BaseSpace
#2138
SantoshThapa1
closed
8 years ago
6
I can't split libraries
#2137
cluzmaria
closed
8 years ago
1
error of rdp classifier by using assign_taxonomy.py in qiime
#2136
KaiFeng007
closed
8 years ago
6
Fix matplotlib version
#2135
bgruening
closed
8 years ago
5
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