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OUTRIDER output is incorrect. When I ran the pipeline for sample UDN057532-P_muscle, the file "UDN057532-P_muscle_muscle_results.tsv"
1. is incorrectly named (the word muscle is duplicated), but mo…
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Hello,
As mentioned [on Neuro Stars](https://neurostars.org/t/bids-validator-incorrect-error-for-duplicate-subjects/22874), the validator returns error [Code 51] PHENOTYPE_SUBJECTS_MISSING when a s…
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Hello,
As you already mentioned in your description, the database becomes very large. To keep the database smaller, it would be nice to be able to select which TSV files should be imported. In my c…
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The September 2024 GO Release ([2024-09-08/](http://release.geneontology.org/2024-09-08/index.html)) is now available.
https://current.geneontology.org/
https://release.geneontology.org/2024-09-08…
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$ hugo version
hugo v0.84.0+extended
I think this is a bit more of a "feature" than it is a bug... but the absence of this feature doesn't match (this) user's expectations that hugo supports C…
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Hi everyone,
I want to create a database with all sequences of mithocondria from insects, like this:
```
haystac database \
--mode build --mtDNA \
--query '("Insecta"[Organism] AND …
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I am trying to control CPU usage for the DRAM.py distill pipeline on DRAM v.1.5.0 that I am using on DRAM.py annotate .tsv output from metagenome assembled genomes. As I am using a shared lab server w…
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The pipeline comprise in 3 steps with example scripts in src/ormir_mids/bin
1. **dicomdir.py**: the datasets are stored in the DICOMDIR structure by separating the different dicom series . Further…
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How to parse "tsv" file to use detected features?
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## Overview
Some of the `object_label`s in `mondo.sssom.tsv` are missing or are not in agreement with what is currently in the source.
## Examples
- OMIM, all cases (except where subject or objec…