WrightonLabCSU DRAM issues

WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

GNU General Public License v3.0

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issues

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VOGDB does not import correctly

#353 nactopus closed 5 days ago
1
Fix install problem for vog db

#352 SilasK opened 1 week ago
2
distill: AttributeError: 'list' object has no attribute 'concat'

#351 marina-vn opened 1 week ago
0
Selection logic for gene_id in amg_summery.tsv

#350 diego00012138 opened 2 weeks ago
1
errors when prepare database

#349 mengyuan-JI opened 1 month ago
2
`genome_stats.tsv` has the wrong tRNA count for MIMAG standards

#348 AroneyS opened 1 month ago
3
AttributeError: 'Series' object has no attribute 'iteritems'

#347 sahilrishav2 closed 1 month ago
0
DRAM2 environment.yaml

#346 SF-Dragon opened 1 month ago
1
How long does populating step take?

#345 jianshu93 opened 2 months ago
3
Need help in preparation of database

#344 sahilrishav2 closed 1 month ago
0
Need help in processing of database

#343 sahilrishav2 closed 1 month ago
0
Problem with database instalation (vog_latest_hmms.txt is empty)

#342 ghost opened 2 months ago
2
Fail in processing vogdb

#341 ShangLiii opened 3 months ago
6
VOGDB issue--extra enclosing folder

#340 schmigle opened 3 months ago
4
Fix `DRAM-setup.py` v1.5.0 for missing `)`

#339 npavlovikj opened 3 months ago
4
cazy annotation format for version 1.4.6

#338 Ales-ibt closed 3 months ago
1
DRAM database installation problem; The subcommand mmseqs createindex DRAM_data/uniref90.20240308.mmsdb DRAM_data/tmp --threads 10 experienced an error

#336 camillaln opened 3 months ago
3
problem about dramv-annotate

#335 xjhzjucas opened 3 months ago
3
bug in `v.1.5.0` on the `DRAM-setup.py` help message

#334 hariszaf opened 4 months ago
1
Continue the "prepare_database" process

#333 chenyj8 opened 4 months ago
2
hmmpress not found during prepare_databases

#332 carleton-envbiotech opened 4 months ago
1
dbcan2 url gone ??

#331 EricDeveaud opened 4 months ago
3
DRAM 1.5.0 installation issues

#330 karenhn opened 5 months ago
6
annotate genes using faa fasta files

#329 avera1988 opened 5 months ago
0
key error: K01566 when using DRAM-v.py annotate

#328 yyyuechen opened 5 months ago
1
Is my DRAM_v run successful?

#327 fhdbqr opened 5 months ago
0
DRAM-setup.py broke when upgrading to v1.5.0

#326 ChristopherBurgess-USDA closed 5 months ago
2
What KEGG .pep files do DRAM devs use for KEGG.pep (and others if they want to comment!)

#325 caity-s opened 6 months ago
0
How to speed up the operation?

#324 qkqk-hub opened 6 months ago
0
DRAM-v.py annotate

#323 hgingras opened 6 months ago
0
Problem with DRAM databases installation

#322 apazminov opened 6 months ago
0
Receiving a "No descriptions found for your id's" for GT2

#321 carleton-envbiotech opened 6 months ago
6
Update DRAM-setup.py

#320 jrr-microbio closed 5 months ago
0
cazy annotations missing in distill heatmap

#319 Aiswarya-prasad opened 6 months ago
0
Steps to download all the databases and setup manually in DRAM

#318 srisvs33 opened 6 months ago
2
Error setting up databases DRAM_data/tmp/10969822372036018711/createindex.sh: line 56: 1115772 Killed

#317 ileleiwi opened 6 months ago
0
Unable to specify database locations

#316 lingrongjin opened 7 months ago
0
No file named viral_genome_summary.tsv and Liquor.html output by DRAM-v.py

#315 actledge closed 7 months ago
1
No file named viral_genome_summary.tsv and Liquor.html Output by DRAM-v.py

#314 actledge closed 7 months ago
0
Downloading CAMPER db

#313 ZarulHanifah closed 7 months ago
1
AttributeError: 'Series' object has no attribute 'iteritems'

#312 mw55309 closed 7 months ago
1
Figure output missing

#311 moyn413 closed 8 months ago
1
DRAM running time

#310 pabloati closed 7 months ago
3
I have some trouble in using DRAM.py annotate

#309 microbial-cookie closed 8 months ago
5
Databases used in DRAM

#308 dcm9123 closed 7 months ago
1
There are no expected target files under the annotation folder.

#307 778055611 opened 8 months ago
0
There are no expected target files under the annotation folder

#306 778055611 closed 7 months ago
3
KEGG Database preparation for DRAM

#305 jrr-microbio closed 9 months ago
7
Update environment.yaml

#304 BioRRW closed 9 months ago
0
Update environment.yaml

#303 BioRRW closed 9 months ago
0