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WrightonLabCSU
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DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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database_handler.py:123: UserWarning: Database does not exist at path None
#302
wuhuiyun07
opened
9 months ago
0
dbCAN ERROR
#301
francesco-ricci
opened
9 months ago
0
Thread usage and computational efficiency
#300
ganiatgithub
opened
9 months ago
0
Error when setting up databases
#299
microbial-cookie
opened
9 months ago
0
Error when setting up databases
#298
microbial-cookie
opened
9 months ago
5
Permission error when setting up databases
#297
pabloati
closed
7 months ago
3
default prodigal command request
#296
bck243
opened
9 months ago
0
Errno 13
#295
Valentin-Bio
opened
10 months ago
0
ValueError: duplicate headers in DRAM-v.py but not when running DRAM.py
#294
STraving
closed
10 months ago
1
scikit-bio release 0.5.9 brings up ImportError.
#293
SebaSilvaS
closed
9 months ago
3
testing database
#292
fujch7
opened
11 months ago
0
description_db.sqlite is taking extremely long to write
#291
BurchamLab
opened
11 months ago
1
Correct syntax for the program "DRAM.py merge_annotations"
#290
psampara
closed
11 months ago
1
KeyError: 'amg_database' in DRAM-v
#289
nologo68
opened
11 months ago
2
amg_flags - glossary?
#288
GeoMicroSoares
closed
11 months ago
0
DRAM distill output errors: almost all values are zeros
#287
Somebodyatthdoor
closed
8 months ago
3
DRAM-v.py --low_mem_mode breaks distill
#286
mlhoggard
opened
1 year ago
0
FileNotFoundError: [Errno 2] No such file or directory: 'prodigal'
#285
tabaresr
opened
1 year ago
0
Is --gene_ko_link_loc necessary if I used --kegg_loc ?
#284
mol529
closed
8 months ago
1
Can we delete the database files after the processing of the databases is done?
#283
saras224
opened
1 year ago
2
cp12 identification
#282
Drob84761
opened
1 year ago
1
object has no attribute query error
#281
saras224
opened
1 year ago
0
download database step is extremely slow
#280
jianshu93
opened
1 year ago
2
Any way to reorganize the distill heatmap
#279
robcli
opened
1 year ago
0
DRAM-v.py annotate
#278
Altay88
opened
1 year ago
0
Error while annotating MAGs
#277
saras224
opened
1 year ago
1
DRAM how to provide database location
#276
saras224
opened
1 year ago
0
VOG annotations Description_Db_Updated: Unknown, or Never
#275
smdabdoub
opened
1 year ago
1
Bottleneck in database download-reg
#274
srisvs33
opened
1 year ago
0
KEGG reformatting regarding to #182
#273
SF-Dragon
closed
7 months ago
1
DRAM-v databases
#272
pooranis
opened
1 year ago
1
155796 killed
#271
TKsh6
opened
1 year ago
8
error with DRAM-v distill
#270
Qiqi04Tsinghua
opened
1 year ago
4
Errors about summariziung anntotations
#269
galaxysxk
opened
1 year ago
1
Resume database setup after error?
#268
ellasiera
opened
1 year ago
0
DRAM2 to spot unexpected combo?
#267
Kirk3gaard
opened
1 year ago
0
DRAM_product_annotations
#266
JoseLopezArcondo
opened
1 year ago
0
Database prep issues
#265
dnolin13
closed
1 year ago
0
Issue in database setup
#264
dnolin13
closed
1 year ago
2
Problem during prepare the database
#263
Gu2uMo
opened
1 year ago
15
dbCAN
#260
JoseLopezArcondo
opened
1 year ago
10
Add workflow for linear api
#257
rmFlynn
closed
1 year ago
0
Calling program has OMP_PROC_BIND set in its environment. Please unset OMP_PROC_BIND.
#256
MonicaSteffi
opened
1 year ago
2
Push a point release to react to ref-seqs changes
#255
rmFlynn
closed
1 year ago
0
URLopen error
#254
spencerlong1
closed
1 year ago
12
"Present in contig" in dramv distill product heatmap
#253
ereyred
opened
1 year ago
1
Apparently you are using only the best hit for CAZy . is there a better option?
#252
SilasK
opened
1 year ago
2
Regarding Viral AMG classification
#251
ShailNair
opened
1 year ago
4
README.md: Direct installation from bioconda
#246
wwood
closed
1 year ago
1
Error in Getting hits from dbCAN
#245
dgittins
closed
1 year ago
6
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