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WrightonLabCSU
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DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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Fixing a bug in setup
#244
rmFlynn
closed
1 year ago
0
error with DRAM-setup.py prepare_databases
#243
DrYoungOG
closed
1 year ago
6
DRAM-setup.py prepare_databases issue
#242
YilingWang1997
closed
1 year ago
2
Fix loc bug
#241
rmFlynn
closed
1 year ago
0
DRAM-setup.py set_database_locations issue
#240
dgittins
closed
1 year ago
8
Fix loc bug
#239
rmFlynn
closed
1 year ago
0
Eukaryotic MAGs/assemblies
#238
andressamv
opened
1 year ago
2
DRAM distill: AttributeError: 'Series' object has no attribute 'Note'
#237
Cam-Baker
closed
1 year ago
6
Issue with downloading viral database (DRAM version 1.4.0)
#236
Somebodyatthdoor
closed
1 year ago
1
Can I download the database manually?
#235
chengzhongyi8
closed
1 year ago
1
Will DRAM-v also work on non-phage viruses like NCLDV?
#234
casett
closed
1 year ago
1
DRAM annotate_genes
#233
trickovicmatija
closed
1 year ago
3
DRAM hanging on Merging ORF annotations step
#232
Rridley7
closed
1 year ago
7
DRAM.py merge_annotations error, not recognizing argument
#231
STraving
closed
1 year ago
3
whether I have successfully set up the dram database?
#230
Sautumn-Lin
closed
1 year ago
0
SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame.
#229
alyzzabc
closed
1 year ago
2
Improved amg summary
#228
rmFlynn
closed
1 year ago
0
DRAM.py annotate stops at "Getting hits from pfam"
#227
alyzzabc
closed
1 year ago
7
Memory limitations
#226
gaferguz
closed
1 year ago
1
DRAM.py error message for tRNAscan-SE
#225
Audra-Leigh
closed
1 year ago
3
`DRAM-setup.py set_database_locations --update_description_db` process was Killed
#224
HushKuo
closed
1 year ago
9
Error in DRAM-setup.py with snakemake
#223
SilasK
closed
1 year ago
5
Error at "Getting descriptions of hits from peptidase" step
#222
Ahmed-Shibl
closed
1 year ago
1
DRAM database setup fails even after skipping Uniref
#221
chahatupreti
closed
1 year ago
7
AttributeError: 'NoneType' object has no attribute 'query' in Dram 1.3.5
#220
jayramr
closed
1 year ago
1
No information for some AMGs
#219
chenyj8
closed
1 year ago
3
About the viral gene flags "K" and "E" from DRAM-v
#218
Jiulong-Zhao
closed
1 year ago
2
Question about implementation of Pfam
#217
cmkobel
closed
1 year ago
2
Dram database download issue looking for files with previous datestamps
#216
jayramr
closed
1 year ago
6
DB can v11 was just released
#215
SilasK
closed
1 year ago
2
Wiki link to 404
#214
cmkobel
closed
1 year ago
2
-o option should have argument `required=True`
#213
cmkobel
closed
1 year ago
2
database_handler.py:51: UserWarning: Database does not exist at path None
#212
cmkobel
closed
1 year ago
16
DRAM-v Annotate Called Genes
#211
chenyj8
closed
1 year ago
1
kegg database
#210
ucassee
closed
1 year ago
1
DatabaseHandler - missing database should raise an exception
#209
gregvonkuster
opened
1 year ago
1
DRAM database config should be accessible / configurable by users
#208
gregvonkuster
closed
1 year ago
6
Dram1.4rc
#207
rmFlynn
closed
1 year ago
1
Change all FTP URLs to HTTP(s) to avoid firewall/ACL issues
#206
mrobbert
closed
1 year ago
1
series.append method is deprecated annd will be removed from pandas in a future version. ...
#205
yolo2fh
closed
1 year ago
1
Update environment.yaml
#204
danesnick
closed
1 year ago
2
Pathway Tools compatible genbank file
#203
kebow
opened
1 year ago
2
Read config location from environment variable
#202
merrygoat
closed
1 year ago
1
Add ability to set location of config file
#201
merrygoat
closed
1 year ago
2
Unable to view heatmap
#200
MeggyC
closed
1 year ago
5
KeyError
#199
woodoo46
closed
1 year ago
10
Get DRAM version from command line
#198
rujinlong
closed
1 year ago
2
Scikit fix
#197
rmFlynn
closed
1 year ago
0
DRAM issue with setting up databases
#196
yugen-miyahara
closed
1 year ago
13
Database preparation error 3
#195
woodoo46
closed
1 year ago
3
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