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WrightonLabCSU
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DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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Read config location from environment variable
#202
merrygoat
closed
2 years ago
1
Add ability to set location of config file
#201
merrygoat
closed
2 years ago
2
Unable to view heatmap
#200
MeggyC
closed
1 year ago
5
KeyError
#199
woodoo46
closed
1 year ago
10
Get DRAM version from command line
#198
rujinlong
closed
2 years ago
2
Scikit fix
#197
rmFlynn
closed
2 years ago
0
DRAM issue with setting up databases
#196
yugen-miyahara
closed
1 year ago
13
Database preparation error 3
#195
woodoo46
closed
2 years ago
3
DRAM 1.3.5, using --categories throws key error exception
#194
gregvonkuster
closed
2 years ago
1
Fix --categories key_error exception
#193
gregvonkuster
closed
2 years ago
1
DRAM on clustered amino acid sequences
#192
eray-sahin
closed
2 years ago
1
Scipy error while downloading the databases
#191
eray-sahin
closed
2 years ago
5
Trouble with conda installation for distill function
#190
sophienixon
closed
2 years ago
3
DRAM-setup.py prepare databases error "returned non-zero exit status 4."
#189
TX0814
closed
2 years ago
5
DRAM error while annotation
#188
poddarharsh15
closed
1 year ago
11
MMSeqs Write Issue
#187
joshuakirsch
closed
2 years ago
2
Error DRAM.py distilll
#186
sixvable
closed
2 years ago
4
DRAM-setup.py error
#184
wangyaxiang008
closed
2 years ago
4
UserWarning: No descriptions were found for your id's. Does this YP_009966079.1 look like an id from viral_description
#183
qinjunjun
closed
2 years ago
4
How to prepare a single .pep KEGG database for DRAM database setup step
#182
nixon444
closed
1 year ago
5
Warnings of annotation
#181
maocheng2020
closed
2 years ago
3
A database error
#179
rmFlynn
closed
2 years ago
1
A question about viral hallmark gene and viral-like gene
#177
fanlu-f
opened
2 years ago
2
KeyError vogdb categories
#176
ZarulHanifah
closed
1 year ago
4
subprocess.CalledProcessError: Command '['mmseqs', 'createindex', '/data1/qinjunjun/zhu_bingduzu/DRAM_data/database_files/uniref90.20220505.mmsdb', '/data1/qinjunjun/zhu_bingduzu/DRAM_data/database_files/tmp', '--threads', '10']' returned non-zero exit status 1
#175
qinjunjun
closed
2 years ago
5
ID from viral_description error (database_handler.py) with no output
#174
callaband
closed
2 years ago
9
No descriptions were found for your id's
#173
fanlu-f
closed
2 years ago
2
DRAM-setup.py prepare_databases --skip_uniref produces error
#171
ipetrushin
closed
1 year ago
2
DRAM-setup.py doesn't work
#170
ExaptedAI
closed
2 years ago
1
All code 3.6 compatible, dbcan description test
#169
rmFlynn
closed
2 years ago
0
dlopen: cannot load any more object with static TLS
#168
SilasK
closed
2 years ago
11
KeyError when Getting descriptions of hits from viral
#167
ipetrushin
closed
2 years ago
5
DRAM-v.py requires Python 3.8+
#166
ipetrushin
closed
2 years ago
1
DRAM.py distill : ValueError: Invalid file path or buffer object type: <class 'NoneType'>
#165
kalonji08
closed
2 years ago
6
vMAG column clarification
#164
LeoBusse
closed
2 years ago
2
SyntaxError: invalid syntax
#163
Pengfei-Turbo
closed
2 years ago
3
InvalidIndexError: Reindexing only valid with uniquely valued Index objects
#162
michoug
closed
1 year ago
10
Can i run DRAM in Workstation with 80Gb RAM and 32 threads?
#161
kalonji08
closed
2 years ago
4
Is there a way to predict if a genome is anaerobic / (factultative) aerobic?
#160
SilasK
opened
2 years ago
1
Download only dbs for DRAM-v?
#159
michoug
closed
2 years ago
1
No descriptions were found for your IDs error
#158
MaxRubinBlum
closed
1 year ago
27
Database does not exist at path %s' % self.description_loc
#157
pulidofabs
closed
1 year ago
18
No descriptions were found for your id's. Does this NP_852561.1 look like an id from viral_description
#156
linda5mith
closed
2 years ago
11
How large should description_db.sqlite be?
#155
y-hwang
closed
2 years ago
5
dbcan: ++ best hits, subfam ec numbers columns change cutoff to 1e-18
#154
rmFlynn
closed
2 years ago
3
Crush some bugs real fast
#153
rmFlynn
closed
2 years ago
0
Issues while updating databases using DRAM-setup.py set_database_locations
#152
avishekdutta14
closed
1 year ago
15
AttributeError: 'NoneType' object has no attribute 'group'
#151
cedhahn
closed
2 years ago
4
Error: No descriptions were found for your id's when running DRAM-v.py annotate
#150
ZongzhiWu
closed
2 years ago
12
Bugfix upgrade
#149
rmFlynn
closed
2 years ago
0
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