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Hi. We are getting all results files but no PDF file for visualization. Please can you indicate whats going wrong.
thanks
Jibran
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Hi jcvi team,
I believe I may have found a few issues in `jcvi/algorithms/tsp.py. I first ran into these issues with my own data, but the issue persists if I use the provided test dataset, so that …
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Hi,
I'm trying to install the jcvi package. Running the test analysis I got these errors:
```
(AllMapsEnv) [tk19812@bc4login1 ALLMAPS-testdata]$ ./run.sh
22:33:31 [allmaps] A total of 120 mar…
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Hi, I run the jcvi path module use the followling command :
DIR=/gss1/home/hjb20181119/panyongpeng/NN1138-2/genome_assess/ALLMAPS-testdata
python3 -m jcvi.assembly.allmaps path $DIR/JM-2.bed $DIR/…
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Hello,
I have tried ALLMAPS and it works well. However, there is some issue with creating the PDF file even with the demo data. Here is the log:
Reading liftover chains
Mapping coordinates
14:48…
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Hi,
This tool seems to be capable of great feats if one has the right data (someone recently showed me some numbers). I do not have genetic map information, but I do have optical map information fr…
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hi, when I installed the pandas and jcvi . there were nothing wrong . but when I run the jcvi, it told me that :
/pandas/compat/__init__.py:117: UserWarning: Could not import the lzma module. Your in…
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Hello, I am trying to generate a consensus sequence by combining three genetic maps and one cross-species synteny data. Applying the combined bed file from three genetic maps generated a consensus seq…
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Hi,
My name is Amit, and I am working on plant genome. My plant species genome size is 440Mb, and used 130x PacBio, Bionano and HiC to eventually derive my final genome assembly. I also used Falcon…
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Output of the `ue4-docker info` command:
```
ue4-docker version: 0.0.45 (latest available version is 0.0.50)
Operating system: Linux (Ubuntu 18.04.4 LTS, 5.3.0-28-generic)
Dock…