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In both the REPL and when executing scripts, the display of symbolic expressions is not, unfortunately, copy and pastable Julia code.
See below for a very simple MWE.
I think it is not currently p…
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Hi,
Thanks for developing this awesome package for measuring differential expression analysis in scRNA-seq through mixed modelling!
In the manuscript, I saw the co-expression analysis. Can you plea…
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Hi Min Cheol,
I want to do an analysis in which cells come from multiple donors and I would like to perform differential gene expression analysis in a non-pseudobulked format. I do not have SNP inf…
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Hi,
I am using tradeSeq to identify TF which are differentially expressed along a lineage of interested. This revealed several significant hits. However, when visualizing the results for a specific…
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Hello,
I am a little confuse. Can we use PseudotimeDE to test if the expression of a given gene differs between two conditions in one lineage ? or does PseudotimeDE only test if a given gene is d…
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I have used this package for a work-flow that is basically: Solve a differential equation (DE) using `DifferentialEquations.jl` and then giving that solution to `SymbolicRegression.jl` to find the ana…
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Perhaps applies to differential gene expression in general; If we want to find cluster specific genes, we have to compare the expression in cluster A to its most similar cluster. Otherwise, the rest o…
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13th-17th March, proposed schedule:
### Day 1
- Introduction to NGS analysis methods
- Introduction to R and Unix
- Practical: Unix
- Practical: R
### Day 2
- Graphics in R
- Alignment basics and RNAs…
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Hi,
I have read a paper called "Transcriptional diversity during lineage commitment of human blood progenitors" recently. In the paper, author used mmdiff to find cell-specificed genes and transcrip…
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in your documents about differential expression you mention "We could also simply compute summary statistics such as mean or median expression level on a per-CellType basis"...
This would be really…
ghost updated
6 years ago