lhe17 nebula issues - Githubissues

lhe17 / nebula

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Running nebula on a subset of genes

#48 danielcgingerich opened 3 weeks ago
1
is it possible to put an interaction term in Nebula?

#47 MANZHAOHUI opened 3 months ago
2
Contrast p-value are different from default-provided p-values

#46 MaximilianNuber opened 3 months ago
1
Error while running group_cell and nebula on seurat object

#45 koushik1989 opened 3 months ago
1
Please do not change future options

#44 HenrikBengtsson opened 4 months ago
0
Multiple Random Effects

#43 westonelison opened 4 months ago
3
Filtering lowly expressed genes

#42 ayyildizd opened 4 months ago
1
Update indexing type for Eigen 3.4 compatibility

#41 andrjohns closed 5 days ago
2
Error in { : task 1 failed - "dimension of 'A' must be at least 3"

#40 meaksu opened 5 months ago
1
Update DESCRIPTION

#39 olivroy closed 5 months ago
0
Base of log(FC)

#38 junishigohoka opened 6 months ago
2
Random effects and complex contrasts

#37 miguecass opened 8 months ago
3
Parallelism and co-expression inference speed

#36 TheAustinator opened 9 months ago
4
there is no package called ‘spatstat.random’

#35 TheAustinator opened 9 months ago
2
Pearson Residuals for PCA

#34 CDSchuster opened 9 months ago
4
Getting error - "dimension of 'A' must be at least 3"

#33 Yifath7 opened 10 months ago
10
Getting Error "Some predictors have zero variation or a zero vector"

#32 h1hui opened 10 months ago
3
Applying FDR to chi-square test?

#31 CDSchuster opened 11 months ago
1
python version

#30 z5ouyang closed 11 months ago
2
Multilevel variables, multiple contrasts and logFC interpretation

#29 CDSchuster closed 11 months ago
3
Created scToNeb.R and updated README

#28 Raghav1881 closed 10 months ago
4
Error when interaction model is specified with fixed effects for all variables and interaction.

#27 AngCamp closed 12 months ago
31
Modelling interaction with cell types

#26 AngCamp closed 1 year ago
3
Nebula is failing to recognize that there are the same number of subject ids as count columns

#25 AngCamp closed 1 year ago
6
Error in { : task 15 failed - "objective in x0 returns NA"

#24 Raghav1881 closed 1 year ago
12
Co-expression code

#23 AbhijeetRPatil opened 1 year ago
1
Two Boolean for One Predictor

#22 h1hui opened 1 year ago
1
task 1 failed - "object 'cv2' not found"

#21 h1hui opened 1 year ago
3
What is the normalization method used by NEBULA?

#20 MANZHAOHUI opened 1 year ago
3
directionality & DESeq

#19 99fatimagr closed 1 year ago
2
Absurd variance result when covariate has data as zero

#18 marianogabitto opened 1 year ago
2
Does nebula supports mixed effects model on pseudobulk data?

#17 ruiye88 opened 1 year ago
1
Interaction term in nebula

#16 AdelynTsai closed 10 months ago
8
Can Nebula do multi-level comparisons?

#15 MANZHAOHUI opened 1 year ago
2
about the logFC in the result

#14 MANZHAOHUI opened 1 year ago
2
Do we have to scale and center all the covariates/predictors before feeding them to NEBULA?

#13 MANZHAOHUI closed 1 year ago
2
when there are two binary predictors or variable,how to assign the variable to test the effect?

#12 gityrl opened 1 year ago
1
Can NEBULA be applied to DE for single cell ATAC sequencing data?

#11 MANZHAOHUI closed 1 year ago
2
Does the P value of the control vs. treatment represent the information of the covariates?

#10 MANZHAOHUI opened 1 year ago
2
Multiple comparisons pval?

#9 slieped opened 1 year ago
1
Base for logFC?

#8 seanken opened 2 years ago
1
Implementation on Spatial Transcriptomics

#7 artemisiat opened 2 years ago
1
Ordering the results of Nebula for upregulation/downregulation

#6 fouerghi opened 2 years ago
3
Paired sample design

#5 WRScottImperial opened 2 years ago
2
Using nebula with SCTransform

#4 aaronkwong closed 2 years ago
7
Data simulation in the original paper

#3 SirKuikka opened 2 years ago
5
Multi-subject DE analysis between two groups with one predictor

#2 SirKuikka opened 2 years ago
7
Testing coefficients

#1 lucia-ramirez opened 3 years ago
3