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The GenBank `LOCUS` or EMBL `ID` lines can record if the sequence is circular or linear.
BioSQL should document how this is stored in the schema (even if this is just writing down how BioPerl does th…
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I don't have an issue, I am just really grateful you wrote this!
I was so frustrated trying to generate a gap file and it was so much easier to convert it directly with the annotation to EMBL forma…
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@joshmoore
I wrote some code to save a `RandomAccessibleInterval` 3D Volume as a bdv.h5
Currently my code only supports RAIs of `UnsignedByteType` or `UnsignedShortType`, but it is very easy to…
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Hi @trautmane ,
when meeting @bogovicj some time ago at EMBL, he told me that adding support for OME-Zarr metadata to the n5 client would be a matter of adding/modifying just a couple of lines.
…
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From Rosemarie.Sadsad [...] health.nsw.gov.au on CPAN.
Hi,
I am running Bio-Roary v3.7.0 as part of the Nullarbor pipeline, however the accessory_binary_genes.fa produced is empty.
0 Dec 8 2…
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e.g.
```
$ java -jar embl-api-validator-1.1.146.jar test.embl
***MESSAGES SUMMARY***
Compressed messages (occurring more than 5 times)
INFO: organism classified. Recruiting translation tab…
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I just came across the preprint and got curious to try out burst.
I need to assigning the taxonomy for Illumina short-reads (MiSeq, up to ~450bp) from an amplicon sequencing run (COI & 16S). Are t…
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we need to make sure that all output files follow a reasonable naming scheme. What I'm proposing:
``` bash
${projectname}_bg7_annotation.$extension
```
where
- `projectname` stands for the project …
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@tpietzsch
My idea is to rewrite the whole `TransformedBox` (https://github.com/bigdataviewer/bigdataviewer-core/blob/master/src/main/java/bdv/tools/boundingbox/TransformedBoxOverlay.java) framework …
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Hey there! I was hoping to get some clarification regarding some issues I've come across...
**ISSUE 1:**
Ran RATT with the following inputs:
- transfer type - Strain
- Isolate - SEA08151 ([.fa…