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Hi!
I hope to run Souporcell on 709 cells generated from plate-based RNA-seq, in lieu of the 10x Genomics in which Souporcell is initially meant for. This dataset consist of high coverage cells of …
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## Running ECCsplorer pipeline on devices with high CPU-core counts
Running the ECCsplorer pipeline using many CPU-cores might result in crashes in the mapping module, showing errors comparable to:…
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...takes too long to complete and fails.
1. Put a limit on the input for clustering and show a clear message to the user.
2. See if we can deploy clustering on better machine.
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Hi,
I am using Bayestyper to genotype my yeast strains after the clustering step but I'm getting an assertion failure error. I ran `bayestyper genotype` with the --noise-genotyping parameter due to…
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Hi Iñigo,
I was performing the Circle-Map Realign tutorial, and encountered a few warnings.
My command:
```
Circle-Map Realign -t 4 -i sort_circular_read_candidates.bam -qbam qname_unkno…
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With the exception of added redundancies and computational time for motif_ix, is there anything wrong with doing this?
```
library(BSgenome.Hsapiens.UCSC.hg18)
library(chromVARmotifs)
library(TFB…
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Hi,
I'm new to using the bacLIFE pipeline for analyzing genomes. I've been encountering various issues, including errors during the big_scape, EGGnog, and antismash steps.
After trying to troubl…
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Hello, I am trying to generate the input for SIGNALS using hmmcopy and counthaps; we have single-end data and we have realized that our data doesn't work with your software, specifically for the count…
shngk updated
7 months ago
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## Expected Behavior
`mmseqs easy-linclust` executes with flag `--min-seq-id`
## Current Behavior
`mmseqs easy-linclust` throws error `Error in argument --min-seq-id` when given flag `--min-seq-i…
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files = ['MII-13.allValidPairs.hic', 'MII-20.allValidPairs.hic']
Sus_scrofa = {'1': 274330532, '2': 151935994, '3': 132848913, '4':130910915, '5':104526007, '6':170843587, '7':121844099,'8':1389662…