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Hi,
I launched GRAViTy_Pipeline_I with the following options: --GenomeDescTableFile "./VEsP-1-like_references.txt" --ShelveDir "/home/arcella/GRAViTy/VEsP-1" --GenomeSeqFile "./short_dataset.gb" --N…
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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Comment below with topics that you would like to see included in this set of intermediate/advanced R tutorials for genomic data analysis. You don't need to know the topic, because someone else might b…
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Hi, could you clarify in the documentation which things I can put into `--path`? Like if I have the entire spades package downloaded, do I just run it with `--path spades.py=$(which spades.py)`? For…
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Hi!
I am trying to binning by SprayNPray, and my command is
`spray-and-pray.py -g /flash/HusnikU/Cong/assembly/ACAB_assembly.fna -bam /flash/HusnikU/Cong/bam/ACAB.bam -out ACAB -t 32 -ref /apps…
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Good day,
I get this error when trying to run the pipeline on the example fastqs (I get the same error on my own fastqs as well):
"(transflow) [jloubser@khaos transflow]$ bash transflow.sh --conf…
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I have searched and download 38 proteomes from unipro database, which can't be used directly for this tool. And I found the error occurred after I edit the command_sequence.sh and add the species inf…
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Hi there,
I'm running a pangenome analyisis on 20 bacterial strains using roary version 3.13, on a server running CentOS 7.
I want to get the unique genes present in only one of those 20 strains b…
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Hello, thank you very much for your SubPhaser software, which is very useful for genotyping. I used HIFI and HIC to assemble the genome of Fragaria x ananassa but I do not know the homology of the 28 …
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Hello dear author, it's exciting to find this new tool!
I've been following Mellisa but gave up due to the lack of detailed annotation of genome features, could you please give a brief suggestion wh…