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### Description of bug
We use BCL Convert to demux Illumina data into a subdirectory of the flowcell's initial runfolder. e.g. if the folder was:
`/path/to/fiowcells/123456_NS5001234_01234_ABCD…
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Hi,
I am trying to compare the results I got from hicExplorer TAD prediction to chromosight. However, I am having trouble using my matrix. I exported the matrix to .cool as described in the instructi…
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Hello again!
I have an issue while I was testing dvsd one.
I use as follow :
```
python ../diffDomain/diffdomain-py3/diffdomains.py dvsd one chr2 10000000 15000000 --reso 40000 data1.mcool …
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Hello,
I keep getting error at the first step running on cis. I have converted three .hic file to 50kb and 100kb and added blacklist. I removed chrM in addition to Y after the first time error came…
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### Description of bug
I am currently testing the latest version of Multiqc before a version bump to our production pipelines. Our current version (1.14) works with our integration tests, however, t…
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**Description of bug:**
I have been struggeling with getting MultiQC to run on fastp output.
My workdir contains 4 files:
- `fastp_bad_MiSeq_data.html`
- `fastp_bad_MiSeq_data.json`
- `fastp_good…
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I install the hicexplorer through command: conda install hicexplorer -c bioconda -c conda-forge
then i use hicDetectLoop and it said:
ImportError: cannot import name 'LearningWithNoisyLabels' f…
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Hi author:
I correct the A/B compartment by use order "Rscript /public/home/xhhuang/biosoft/dcHiC/dchicf.r --file input_f.txt --pcatype select --dirovwt T --gfolder Gbar_100000_goldenpathData --gen…
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### Description of bug
Hi,
I have recently used NanoPlot 1.41.6 and tried to ingest the NanoStat.txt summary files into the multiQC report using v1.15 but kept receiving `[WARNING] No analysis re…
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### Description of bug
Hi @vladsavelyev and @ewels
MultQC 1.17 fails to detect fastp files - the same works with MultiQC 1.16
I will attach the verbose output from MultiQC 1.16 as a comment so…