ay-lab dcHiC issues - Githubissues

ay-lab / dcHiC

dcHiC: Differential compartment analysis for Hi-C datasets

MIT License

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Issue with pandoc

#100 Weiming113 closed 1 month ago
4
The program segfaults on ubuntu 22.04

#99 bhristov6 opened 2 months ago
5
error at pcatype=cis level

#98 Sen0108 closed 2 months ago
7
recommended or default p-value/p-adj cutoff

#97 usernicai closed 3 months ago
4
pcatype enrich gene list error

#96 katecycho closed 3 months ago
2
Identify differential compartment bins from a user-defined PC1 table of five time points

#95 Jiangyuan-Liu closed 2 months ago
1
A question about Fig 5C legend "membership"

#94 Jiangyuan-Liu closed 4 months ago
1
Can't get --bdgfile flag to work.

#93 RomeroMatt closed 4 months ago
2
pca select error: hclust

#92 katecycho closed 3 months ago
2
Error: not enough observations

#91 katecycho closed 4 months ago
8
Question regarding enrich

#90 RomeroMatt closed 5 months ago
2
issue with html

#89 katecycho closed 5 months ago
2
Error: upper value must be greater than lower value after removing X, Y, M chromosomes

#88 yardimcilab closed 5 months ago
3
Update dchicf.r

#87 ay-lab closed 5 months ago
0
In function `geneEnrichment`, the "pcQnm" bedgraph is loaded when `pcgrp `= "pcOri" — is this correct?

#86 kalavattam closed 5 months ago
2
error running trans

#85 katecycho closed 5 months ago
3
error in hclust (--pcatype select)

#84 katecycho closed 6 months ago
3
error: arguments imply differing number of rows

#83 katecycho closed 6 months ago
11
question about input/sample subtypes

#82 katecycho closed 6 months ago
5
Error running FitHiC step in dcHiC workflow for cis interactions: `Error in ids_sample[[i]] : subscript out of bounds`

#81 kalavattam closed 6 months ago
6
Update piped calls to 'sort -k 1,1' in dchicf.r to 'sort -k1,1V,' which prevents bedtools chromosome-order (and subsequent) errors when running 'dchicf.r --pcatype select'

#80 kalavattam closed 7 months ago
3
Solution of installation error for hashmap package

#79 ay-lab opened 8 months ago
0
Issue with FitHiC implementation

#78 asgda opened 9 months ago
10
Error during subcompartment calling

#77 TH-L closed 8 months ago
6
My input hic file contains chr1, chr2, chr3..... instead of 1, 2, 3..... and therefore shows error when I preprocess the hic files for running dchic

#76 asgda closed 9 months ago
4
Fix Issue #67 + Documentation Enhancements

#75 jeffreygwang closed 10 months ago
0
Pairwise and multi-datasets A/B compartment calling with different resolutions

#74 KC-Lan closed 11 months ago
2
Question regarding the 'refgene.bed' file in geneEnrichment analysis

#73 KC-Lan closed 11 months ago
2
Error in step 2 of the run_dchic.sh script

#72 asgda opened 11 months ago
6
--pcatype cis crashing

#71 wkc1986 closed 11 months ago
2
preprocess.py -removeChr arguments must be lowercase

#70 wkc1986 closed 11 months ago
1
error when running cis and analysis

#69 catherine0202 closed 11 months ago
5
Error for trans

#68 YH-Li7 closed 1 year ago
8
Small bug in utillities/preprocess.py + solution, 'chromosome not found in the file' error.

#67 lauhinojosa closed 10 months ago
2
dcHIC --pcatype analyze: dim(X) must have a positive length

#66 Lucas446 closed 1 year ago
2
Visualization

#65 Lucas446 closed 1 year ago
12
"IndexError: list index out of range" while using --pcatype fithic

#64 Lucas446 opened 1 year ago
11
Error while installing functionsdchic

#63 Lucas446 closed 1 year ago
4
Bugfix in hmmsegment

#62 robomics closed 11 months ago
1
The difference between calculations for weighted center across replicates or samples

#61 dangdachang closed 1 year ago
6
Update hmmsegment to improve error handling

#60 robomics closed 1 year ago
1
Add --seed CLI option

#59 robomics closed 1 year ago
1
dloop error

#58 Zheng19w closed 1 year ago
6
Genome selection problem

#57 Zheng19w closed 1 year ago
9
cis interaction matrix and trans interaction matrix

#56 Zheng19w closed 1 year ago
10
running dhHiC on nf-core hic pipeline output file

#55 chklopp closed 1 year ago
1
pcOri values not matched between different conditions

#54 KunFang93 closed 1 year ago
2
How to extract compartment A/B information for each sample

#53 KunFang93 closed 1 year ago
6
Error: upper value must be greater than lower value Execution halted

#52 KunFang93 closed 1 year ago
3
`numberclust` parameter

#51 YichaoOU closed 1 year ago
2