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ay-lab
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dcHiC
dcHiC: Differential compartment analysis for Hi-C datasets
MIT License
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optimal resolution for compartment call
#106
sotuamax
opened
2 weeks ago
2
Is the input data distance-normalized count or raw count?
#105
sotuamax
closed
3 weeks ago
2
Can results from Mustache loop calling be used in enrichment
#104
Naveen-Ahuja
closed
3 weeks ago
6
Error in aggregate.data.frame(lhs, mf[-1L], FUN = FUN, ...) :
#103
jiangshan529
closed
2 months ago
6
Issue with running dcHiC
#102
rkash
closed
3 months ago
10
functionsdchic install error
#101
IcyYeyangchen
closed
4 months ago
2
Issue with pandoc
#100
Weiming113
closed
6 months ago
4
The program segfaults on ubuntu 22.04
#99
bhristov6
opened
6 months ago
17
error at pcatype=cis level
#98
Sen0108
closed
7 months ago
7
recommended or default p-value/p-adj cutoff
#97
usernicai
closed
8 months ago
4
pcatype enrich gene list error
#96
katecycho
closed
8 months ago
2
Identify differential compartment bins from a user-defined PC1 table of five time points
#95
Jiangyuan-Liu
closed
7 months ago
1
A question about Fig 5C legend "membership"
#94
Jiangyuan-Liu
closed
8 months ago
1
Can't get --bdgfile flag to work.
#93
RomeroMatt
closed
9 months ago
2
pca select error: hclust
#92
katecycho
closed
8 months ago
2
Error: not enough observations
#91
katecycho
closed
9 months ago
8
Question regarding enrich
#90
RomeroMatt
closed
9 months ago
2
issue with html
#89
katecycho
closed
10 months ago
2
Error: upper value must be greater than lower value after removing X, Y, M chromosomes
#88
yardimcilab
closed
10 months ago
3
Update dchicf.r
#87
ay-lab
closed
10 months ago
0
In function `geneEnrichment`, the "pcQnm" bedgraph is loaded when `pcgrp `= "pcOri" — is this correct?
#86
kalavattam
closed
10 months ago
2
error running trans
#85
katecycho
closed
10 months ago
3
error in hclust (--pcatype select)
#84
katecycho
closed
11 months ago
3
error: arguments imply differing number of rows
#83
katecycho
closed
11 months ago
11
question about input/sample subtypes
#82
katecycho
closed
11 months ago
5
Error running FitHiC step in dcHiC workflow for cis interactions: `Error in ids_sample[[i]] : subscript out of bounds`
#81
kalavattam
closed
11 months ago
6
Update piped calls to 'sort -k 1,1' in dchicf.r to 'sort -k1,1V,' which prevents bedtools chromosome-order (and subsequent) errors when running 'dchicf.r --pcatype select'
#80
kalavattam
closed
12 months ago
3
Solution of installation error for hashmap package
#79
ay-lab
opened
1 year ago
0
Issue with FitHiC implementation
#78
asgda
opened
1 year ago
10
Error during subcompartment calling
#77
TH-L
closed
1 year ago
6
My input hic file contains chr1, chr2, chr3..... instead of 1, 2, 3..... and therefore shows error when I preprocess the hic files for running dchic
#76
asgda
closed
1 year ago
4
Fix Issue #67 + Documentation Enhancements
#75
jeffreygwang
closed
1 year ago
0
Pairwise and multi-datasets A/B compartment calling with different resolutions
#74
KC-Lan
closed
1 year ago
2
Question regarding the 'refgene.bed' file in geneEnrichment analysis
#73
KC-Lan
closed
1 year ago
2
Error in step 2 of the run_dchic.sh script
#72
asgda
opened
1 year ago
6
--pcatype cis crashing
#71
wkc1986
closed
1 year ago
2
preprocess.py -removeChr arguments must be lowercase
#70
wkc1986
closed
1 year ago
1
error when running cis and analysis
#69
catherine0202
closed
1 year ago
5
Error for trans
#68
YH-Li7
closed
1 year ago
8
Small bug in utillities/preprocess.py + solution, 'chromosome not found in the file' error.
#67
lauhinojosa
closed
1 year ago
2
dcHIC --pcatype analyze: dim(X) must have a positive length
#66
Lucas446
closed
1 year ago
2
Visualization
#65
Lucas446
closed
1 year ago
12
"IndexError: list index out of range" while using --pcatype fithic
#64
Lucas446
closed
2 weeks ago
11
Error while installing functionsdchic
#63
Lucas446
closed
1 year ago
4
Bugfix in hmmsegment
#62
robomics
closed
1 year ago
1
The difference between calculations for weighted center across replicates or samples
#61
dangdachang
closed
1 year ago
6
Update hmmsegment to improve error handling
#60
robomics
closed
1 year ago
1
Add --seed CLI option
#59
robomics
closed
1 year ago
1
dloop error
#58
Zheng19w
closed
1 year ago
6
Genome selection problem
#57
Zheng19w
closed
1 year ago
9
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