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ay-lab
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dcHiC
dcHiC: Differential compartment analysis for Hi-C datasets
MIT License
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`numberclust` parameter
#51
YichaoOU
closed
1 year ago
2
error: Two levels of parallelism are used. See `?assert_cores`.
#50
Woohootakeoff
closed
1 year ago
5
hashmap
#49
EnrichettaMileti
closed
1 year ago
3
Normalized counts or raw counts?
#48
Nico-FR
closed
1 year ago
2
error in hclust (--pcatype select)
#47
Nico-FR
closed
1 year ago
4
Support for other genomes:
#46
Nico-FR
closed
1 year ago
2
Make some files more unix-friendly
#45
robomics
closed
1 year ago
3
Update preprocess.py to use pipes instead of temp files
#44
robomics
closed
1 year ago
1
Add shebangs to scripts
#43
robomics
closed
1 year ago
1
Add missing dependencies to dchic.yml
#42
robomics
closed
1 year ago
1
Questions regarding running dcHiC
#41
sdontsay
closed
1 year ago
7
Unknown genome id while open the html file
#40
xinghua1001
closed
1 year ago
1
"Fithic requires a bias file." in "--pcatype fithic" step
#39
YiweiNiu
closed
1 year ago
4
error in pcselect step
#38
adalgarno
closed
1 year ago
4
Modality cis issues and target folder definition
#37
sebastian-gregoricchio
closed
1 year ago
1
How to run dcHiC without replicates
#36
BenxiaHu
closed
1 year ago
8
Error in subcompartment analysis
#35
csijcs
closed
2 years ago
9
Correct the A/B compartment
#34
Nuturetree
closed
2 years ago
3
run err
#33
Nuturetree
closed
2 years ago
10
Error when running --pcatype analyze
#32
csijcs
closed
2 years ago
1
PC1 of one chr is chromosome arm
#31
csijcs
closed
2 years ago
3
FitHiC index error - ExpCC not calculated
#30
cvahlensieck
closed
2 years ago
7
error while running dcHiC
#29
Yuxinagli
closed
2 years ago
2
Error in checkForRemoteErrors when performing PCA on cis interaction matrix
#28
QianzhaoJ
closed
2 years ago
1
dcHiC without replicates
#27
papelypluma
closed
2 years ago
4
Pre-processing data for input
#26
papelypluma
closed
2 years ago
8
functionsdchic.cpp:12:10: fatal error: BMAcc.h: No such file or directory
#25
papelypluma
closed
2 years ago
7
% variance explained by PC1
#24
esebesty
closed
2 years ago
3
General questions about changes in 3D organization of chromatin
#23
biozzq
closed
2 years ago
2
How to escape the problem due to Qt platform?
#22
biozzq
closed
2 years ago
2
FileNotFoundError for chr1 but not others
#21
esebesty
closed
3 years ago
2
File for -repParams missing chr Y
#20
esebesty
closed
3 years ago
2
B-to-A switch generated by dcHiC cannot be validated by HiCExplorer and HOMER
#19
biozzq
closed
2 years ago
0
Add covariates to the model
#18
csijcs
closed
2 years ago
2
Differential calling error
#17
sespesogil
closed
3 years ago
1
a general question
#16
tarak77
closed
3 years ago
0
Question about multiple comparison method
#15
kalavattam
closed
3 years ago
1
Summary error
#14
biozzq
closed
3 years ago
5
Error when using the latest version of dcHiC
#13
biozzq
closed
3 years ago
3
questions about the chr substring in chromosome
#12
biozzq
closed
3 years ago
2
How to deal with technical duplication
#11
biozzq
closed
3 years ago
1
Support for other genomes.
#10
jemilianosf
closed
3 years ago
2
KeyError with gofilter.py: Issue with .bed file?
#9
kalavattam
closed
3 years ago
2
Typo
#8
haizi-zh
closed
3 years ago
1
How to generate "-repParams" file
#7
haizi-zh
closed
3 years ago
2
how to define signicantly differential compartment switch
#6
BenxiaHu
closed
3 years ago
1
How to locate the highly different compartment
#5
biozzq
closed
3 years ago
6
plot error
#4
biozzq
closed
3 years ago
1
Error during running dcHiC
#3
biozzq
closed
3 years ago
4
Some questions about Pre Processing Correlation Matrices
#2
biozzq
closed
3 years ago
4
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