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I am currently using MetaproSIP to benchmark my 25% 13C labeled E. coli peptide mass spectra data. I used the unlabeled peptide feature XML from an unlabeled search, as the MS2 search engine of OpenMS…
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I utilized MSFragger-PD for performing an open search on a set of 12 files, totaling 23 GB in size. Remarkably, the close search of these identical files using SEQUESTA completes within approximately …
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- Describe the issue or question:
Batmass-IO version 1.28.12
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.nustaq.serialization.FSTClazzInfo…
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I am new to Fragpipe. Trying to analyze data from Thermofisher. But gets stuck at the error:
Could not find protein.fas. The system could not find the specific file.
Please help!
Here is the Ru…
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I used MSConverter to convert Agilent .d file to .mzXML file. Then use Fragpipe for database searching.
The Run was stopped. Please help!
System OS: Windows 10, Architecture: AMD64
Java Info:…
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### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:TMT:ID:PSMRESCORING:PERCOLATOR (20150820_Haura-Pilot-TMT1-bRPLC11-1)'
Caused by:
Process `NFCORE_QUANTM…
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Concerning ISOTOPE PATTERN FINDER
When applying the ISOTOPE PATTERN FINDER module with the following parameters (but it always happens)
![Isotope pattern parameters](https://user-images.githubuse…
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Hi There
I Got the search result but the PDV can't display the spectrum.
Invalid spectrum file path. Please check it.
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### Introduction
Hi there! I am Pablo Velazquez and I am a PhD candidate in the biotechnology department and in the biocatalysis group. I Love sports and cooking :D
### Describe your research …
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### Introduction
Hi, I‘m Arjan and I‘m a first year PhD student at QN.
### Describe your research in 2-3 sentences to someone that is not from your field (please avoid abbreviations)
…