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**Context**
On a general, all-lineage tree, when we have only 1 focal BA.2 sample, which pulled in just a few contextual BA.2 samples, most BA.2 samples ended up in excluded_by_diagnostics.txt file a…
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E.g.: BA.2 + all sublineages.
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Another question to @DroidThug about Camera. As i see you use in your tree many camera-related flags, but most of them don't use in Lineage sources. For example:
USE_MTK_CAMERA_WRAPPER := true - t…
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Presenter: Maureen Stolzer
Link: http://www.cs.cmu.edu/~durand/Notung/
Brief description: Notung is a gene tree-species tree reconciliation software package that supports duplication-loss (DL) a…
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Hi,
I have a use case and i am not sure if that has been solved by ZetaSql . I have a dump of sqls. I want to find the dependency graph from that meaning which table is dependent on which and a graph…
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I was impatient and clicked `sort by Pango lineage` when only 100 or so sequences out of 200 had been analyzed.
To my surprise, some of the sequences that hadn't been analyzed by that time were nev…
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I want a function that will remove the topology after (forwards in time) a specific time, and mark each extant lineage with as a sample. The intuition is that we're drawing a line accross the tees, an…
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**Description**
**Sub-lineage of:** XDY
**Earliest sequence:** 2024-7-31, USA, Massachusetts — EPI_ISL_19347338
**Most recent sequence:** 2024-8-28, USA, South Carolina — EPI_ISL_19394879
**Contin…
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In case you were wondering why the current tests fails after merging here is the reason. With some deprecation of `networkx` module some tests directly fail (e.g., https://github.com/networkx/networkx…