sars-cov-2-variants lineage-proposals issues

sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages

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issues

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MC.1 subbranch with S:V16F(62, Canada, 2 provinces)

#2242 Over-There-Is opened 1 day ago
3
KP.3.1.1 subbranch with S:S221T(15, ES 14, GB 1)

#2241 Over-There-Is opened 1 day ago
1
KP.3.1.1 subbranch with Orf3a:R68I and S:VYY143-145del instead of S:Y144del(8, US 7, FR 1)

#2240 Over-There-Is opened 1 day ago
0
MC.13 subbranch with S:R237K, Orf1a:G353C and Orf3a:H150R(10, US 7, AU 3)

#2239 Over-There-Is opened 1 day ago
0
KP.3.1.1 subbranch with S:ins16IPLF instead of S:ins16MPLF(15, 4 regions)

#2238 Over-There-Is opened 1 day ago
0
MC.13.1 + S:T323I, S:L368I, S:T572I, ORF1a:T614I, ORF1b:G219S (6 in Canada)

#2237 Fearuncle opened 1 day ago
1
XDV.1.7 + S:M153I + S:L1141S + 7AA mini Saltation in HK (2)

#2236 FedeGueli opened 2 days ago
0
KP.3.1.1 + S:A846G (C>G) (7 , Ontario)

#2235 FedeGueli opened 3 days ago
0
KP.3.1.1 + S:V1137I (17, 9 places three continents)

#2234 FedeGueli opened 3 days ago
0
LP.1 + S:A688V + S:V47F cluster in Canada, Ontario (16)

#2233 FedeGueli opened 3 days ago
0
KP.3.1.1+Orf1a:P1096T+S:A67V(14 seqs, 7 places)

#2232 xz-keg opened 3 days ago
0
KP.3.1.1+Orf1b:R1736K+S:R346T,S929T(9 seqs, 7 places in Chile/Brazil)

#2231 xz-keg opened 3 days ago
0
ND.1.1+Orf1a:G572E,S:L176F(32 seqs, 7 places)

#2230 xz-keg opened 3 days ago
0
MC.10.2 got S:K679R in New Zealand (8)

#2229 FedeGueli opened 4 days ago
0
XDV.1.5.1+S:A435S,ORf3a:D155H(3 seqs, 2 places in Hubei, China)

#2228 xz-keg opened 4 days ago
0
MC.9 + S:T22N and 4AA minisaltation (2 , Arizona, Iowa)

#2227 FedeGueli opened 4 days ago
0
LF.7 + S:H445P in Canada (4, Ontario)

#2226 FedeGueli opened 4 days ago
0
MC.13 with S:L335F got also S:E281V in Sovenia (5)

#2225 FedeGueli opened 4 days ago
2
KP.3.1.1+Orf1b:S2198I+S:M153V with 19722 reverted (34 seqs, 4 places)

#2224 xz-keg opened 5 days ago
3
KP.1.1.3+S:I326V(17 seqs, >10 places)

#2223 xz-keg opened 1 week ago
1
MC.11+Orf1b:K50R+Orf1a:S1905F+S:T572I(14 seqs, 5 places)

#2222 xz-keg opened 1 week ago
0
KS.1.1+Orf1a:D1160Y+Orf1a:H1610Y,S:A575S(15 seqs, 7 places)

#2221 xz-keg opened 1 week ago
0
LP.8.1+Orf1b:V980I, Orf10:Q29*(23 seqs, 3 places)

#2220 xz-keg opened 1 week ago
0
KP.2.6 got 493E ( 2, Canada, Israel)

#2219 FedeGueli opened 1 week ago
0
Mini spike saltation on a KP.1.1.5 (59S) + H445P branch emerged in India with T22N, H49Y, K478R, (2 seqs, 2 places)

#2218 FedeGueli opened 1 week ago
0
Russia nearly-dominant S31P,F456L,R346T id'd as JN.1.40 by GISAID

#2217 MCB6 closed 1 week ago
2
LF.7.1 + S:S704L, ORF1a:P4120L, ORF1b:M2381T (15 in Canada)

#2216 Fearuncle opened 1 week ago
0
LF.7.1 + S:T572I (4 on Usher , 3 places)

#2215 FedeGueli opened 1 week ago
0
XEL+S:V159I( 27 seqs, 5 places of Russia)

#2214 xz-keg opened 1 week ago
0
MC.9 + S:F135L (10, 3 Places)

#2213 FedeGueli opened 1 week ago
0
NC.1 (KS.1.1.1.1) got 445P in Scotland and it is growing (5)

#2212 FedeGueli opened 1 week ago
1
LF.7.1 + S:K529R (6, 6 places)

#2211 FedeGueli opened 1 week ago
0
MC.13+S:A435S buried in a Flip-flop branch(13 seqs, 9 places)

#2210 xz-keg closed 1 week ago
2
MC.1 + S:M153I (47 in Canada)

#2209 Fearuncle opened 1 week ago
1
KP.3.3 with S:F201L and S:F565S in Japan (10)

#2208 FedeGueli opened 1 week ago
0
MC.16+S:F65S(23 seqs, 9 places around 10% in Chile)

#2207 xz-keg opened 2 weeks ago
5
MC.1+S:A1174V(83 seqs, 7 places)

#2206 xz-keg opened 2 weeks ago
5
Usher separation of MK.1 to two branches.

#2205 xz-keg opened 2 weeks ago
2
Mini saltation JN.1.4 with S:N30K, V47I, R346T and Orf9b:L64P, (4, Hong Kong)

#2204 FedeGueli closed 1 week ago
2
KS.1.1.2/JN.1.11.1.X (likely KP.3.1.1) recombinant with a 4AA mini saltation (16, Ontario)

#2203 FedeGueli opened 2 weeks ago
4
MC.16 subbranch with Orf9b:R47H and Orf1a:P1786L(68, 11 countries)

#2202 Over-There-Is opened 2 weeks ago
1
MC.22 + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places)

#2201 FedeGueli opened 2 weeks ago
1
XEC + ORF1b:P1664S, ORF1a:M1771V (166 mainly in Ontario) Branch 1: 31 with N:A208S 3 of those are with S:S98F, Branch 2: 19 with ORF7b:H42Y and 15 are with ORF1b:E1871A

#2200 Fearuncle opened 2 weeks ago
10
Spike diversity: LP.8.1 with K679R( 10) and LP.8.2 with S:A475V (9) and others

#2199 FedeGueli opened 2 weeks ago
27
MC.13 subbranch with Orf9b:V30A(75, 3 countries, mainly in US)

#2198 Over-There-Is opened 2 weeks ago
3
LB.1.3 subbranch with S:N185del, F186I and Orf1a:P4197S on Orf6:T10I branch(55, 4 countries in Americas)

#2197 Over-There-Is opened 2 weeks ago
1
MC.1+Orf1a:I671V+S:A688V(24 seqs, 6 places)

#2196 xz-keg opened 3 weeks ago
0
Another MC.1+S:A942S(58 seqs, 8 places)

#2195 xz-keg opened 3 weeks ago
3
Suggestion to use SGTF as base for BA.2.86 seqs to handle S:68 mutations

#2194 xz-keg opened 3 weeks ago
6
JN.1.67.1 / XDV.1.9.1 recombinant (2, CN-AH 1, DE-BY 1)

#2193 Over-There-Is opened 3 weeks ago
5