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**Submitting author:** @smikhael (Shadia Mikhael)
**Repository:** https://github.com/Edinburgh-Imaging/Masks2Metrics
**Version:** v1.0
**Editor:** @cMadan
**Reviewer:** @Kevin-Mattheus-Moerman
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**Submitting author:** @visdoom (Sophie Laturnus)
**Repository:** https://github.com/berenslab/MorphoPy
**Version:** v0.71
**Editor:** @oliviaguest
**Reviewer:** @Emptymalei, @mstimberg
**Archive:…
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Hello fellow morphometric buddies!
I am very new to the world of geometric morphometrics, so my appologies if there is a simple soluation to my query.
I have carried out two 2B-PLS analysis in …
EveTC updated
4 years ago
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The output morphometrics excel file of ADS is giving coordinates which do not correspond to the coordinates shown in FSLeyes.
One solution would be to flip along Y the image on FSLeyes (needs to b…
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Hello, i am trying to load an swc which contains a root point and an axon but no annotated soma. I was unable to accomplish this using ```load_neuron()``` as it fails if there is no soma. I could not …
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Currently we simply call the rstudio `viewer` function to preview an image. Perhaps we can instead wrap it into an html widget so that the same figure will automatically be inserted into the document …
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### Expected behavior
UseCase is expected to handle following cell types
1. D1-type Medium Spiny Neurons
2. D2-type Medium Spiny Neurons
3. Fast Spiking Interneurons
### Actual Behavior (please…
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Currently, for `get_axon_morphometrics` there are:
- myelin_diam --> outer diameter of myelinated axon (axon + myelin)
- myelin_area --> surface of axon + myelin
See [lines](https://github.com/neu…
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discuss all relevant dropdown options with data custodians
- tag status
- tag type
- tag side should be body part
- tag position should cater for other body parts
- habitat
- all NAs in different cont…
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- currently the [doc](https://axondeepseg.readthedocs.io/en/stable/documentation.html#axondeepseg) suggests to install v1.9.0, which based on the recent PR #140 should be v1.3.0
- we should provide a…